RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RHOGP84095 191 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 C1QL3Q5VWW1 255 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 FAM90A1Q86YD7 464 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 NXPH1P58417 271 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 KCNK17Q96T54 332 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 HIST1H2BLQ99880 126 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 OSTCQ9NRP0 149 aa12.2□□□□□ -0.46
COL7A1-201ENST00000328333 A0A0G2JLM5 398 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 PRSS41Q7RTY9 318 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 PLAC1Q9HBJ0 212 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 NPIPB11E5RHQ5 1161 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 PGFP49763 221 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 CLEC7AQ9BXN2 247 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 SCTP09683 121 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 SPINK14Q6IE38 97 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 OR9G1Q8NH87 305 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 SFTPCP11686 197 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 ZNF562Q6V9R5 426 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 FAM57AQ8TBR7 257 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 TRBV24-1A0A075B6N3 115 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 ZNF818PQ6ZRF7 136 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 C9orf40Q8IXQ3 194 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 HEPN1Q6WQI6 88 aa12.19□□□□□ -0.46
COL7A1-201ENST00000328333 NHP2Q9NX24 153 aaKnown RBP12.19□□□□□ -0.46
COL7A1-201ENST00000328333 UCP1P25874 307 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 NBEAP1P0C6P0 100 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 KIAA1644Q3SXP7 199 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 CCL20P78556 96 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 WDR82Q6UXN9 313 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 DRAM1Q8N682 238 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 UCP2P55851 309 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 LHFPL4Q7Z7J7 247 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 TM2D1Q9BX74 207 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 UPK3AO75631 287 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.18□□□□□ -0.46
COL7A1-201ENST00000328333 NRXN2Q9P2S2 1712 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 DSCAML1Q8TD84 2053 aa12.18□□□□□ -0.46
COL7A1-201ENST00000328333 KLK10O43240 276 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 WISP3O95389 354 aaPredicted RBP12.17□□□□□ -0.46
COL7A1-201ENST00000328333 ADRA2AP08913 450 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 ZNF721Q8TF20 911 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 KLHDC2Q9Y2U9 406 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 ADAMTS9Q9P2N4 1935 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 FOXL1Q12952 345 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 CFAP161Q6P656 301 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 FER1L6-AS1Q8NA97 138 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 GTF3AQ92664 365 aaKnown RBP12.17□□□□□ -0.46
COL7A1-201ENST00000328333 FNDC4Q9H6D8 234 aaPredicted RBP12.17□□□□□ -0.46
COL7A1-201ENST00000328333 APELAP0DMC3 54 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 M0R2P5 195 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 MPZP25189 248 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 TRAV8-1A0A0A6YYK1 113 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 C18orf15Q96N68 181 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 R4GN57 208 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.17□□□□□ -0.46
COL7A1-201ENST00000328333 IL11P20809 199 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 SSBP2P81877 361 aaPredicted RBP12.17□□□□□ -0.46
COL7A1-201ENST00000328333 PLA2G3Q9NZ20 509 aa12.17□□□□□ -0.46
COL7A1-201ENST00000328333 MUC4Q99102 2169 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 TDHQ8IZJ6 230 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 GP6Q9HCN6 339 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 ZNF815PA8K554 130 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 IDI2-AS1Q9NZ38 188 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 F8VVB4 439 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 F8VWA3 439 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 ARPC1AQ92747 370 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 DMRTA2Q96SC8 542 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 UBE2V1Q13404 147 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 TMEM14DPA8MWL7 114 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 INAFM2P0DMQ5 153 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 C1orf194Q5T5A4 169 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 ZG16O60844 167 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 VEGFBP49765 207 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 SEMA5BQ9P283 1151 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 LHFPL6Q9Y693 200 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 NLRC5Q86WI3 1866 aa12.16□□□□□ -0.46
COL7A1-201ENST00000328333 CISD3P0C7P0 127 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 MAGEA5P43359 124 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 IGKCP01834 107 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 OTORQ9NRC9 128 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 HCP5Q6MZN7 132 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 COQ2Q96H96 371 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 DNAJC30Q96LL9 226 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 FOXQ1Q9C009 403 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 ZNF703Q9H7S9 590 aaPredicted RBP12.15□□□□□ -0.46
COL7A1-201ENST00000328333 UMODP07911 640 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 TMEM8BA6NDV4 472 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 PRR33A8MZF0 331 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 IGKV3-7A0A075B6H7 116 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 PATE4P0C8F1 98 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 PCSK4Q6UW60 755 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 LOXL4Q96JB6 756 aa12.15□□□□□ -0.46
COL7A1-201ENST00000328333 FOXI3A8MTJ6 420 aaPredicted RBP12.15□□□□□ -0.47
COL7A1-201ENST00000328333 FOXA3P55318 350 aaPredicted RBP12.14□□□□□ -0.47
COL7A1-201ENST00000328333 A0A0G2JMM0 328 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 A0A1W2PPB8 328 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 KIR3DP1A8MWS1 328 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 NDUFA3O95167 84 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 HOXB3P14651 431 aaPredicted RBP12.14□□□□□ -0.47
COL7A1-201ENST00000328333 SOX8P57073 446 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms