RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 SMIM8Q96KF7 97 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 TMEM140Q9NV12 185 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 SLC25A17O43808 307 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 TPT1P13693 172 aaKnown RBP8.08□□□□□ -1.12
HMGB3-201ENST00000325307 RPL12P30050 165 aaKnown RBP8.08□□□□□ -1.12
HMGB3-201ENST00000325307 NKX2-1P43699 371 aaPredicted RBP8.08□□□□□ -1.12
HMGB3-201ENST00000325307 Q6ZRM9 215 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 DYNAPQ8N1N2 210 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 OR4A16Q8NH70 328 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 LYPD6BQ8NI32 183 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 OSR1Q8TAX0 266 aaPredicted RBP8.08□□□□□ -1.12
HMGB3-201ENST00000325307 MAGT1Q9H0U3 335 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 FBXL17Q9UF56 701 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 ZANQ9Y493 2812 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 CR1P17927 2039 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 A0A1W2PPQ1 181 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 IFITM10A6NMD0 228 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 OR2B8PP59922 312 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 WFDC1Q9HC57 220 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 CACFD1Q9UGQ2 172 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 OOSP1A8MZH6 123 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 AP4M1O00189 453 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 CAV2P51636 162 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 CXorf66Q5JRM2 361 aaPredicted RBP8.07□□□□□ -1.12
HMGB3-201ENST00000325307 OR4A47Q6IF82 309 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 POMT1Q9Y6A1 747 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 MYO9AB2RTY4 2548 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 SRRM4A7MD48 611 aaKnown RBP8.07□□□□□ -1.12
HMGB3-201ENST00000325307 IGKV1D-33P01593 117 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 IGKV1-33P01594 117 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 ZNF25P17030 456 aaPredicted RBP8.07□□□□□ -1.12
HMGB3-201ENST00000325307 TMEM177Q53S58 311 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 PYY3Q5JQD4 70 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 OR5T1Q8NG75 326 aa8.07□□□□□ -1.12
HMGB3-201ENST00000325307 RNASE8Q8TDE3 154 aaKnown RBP8.07□□□□□ -1.12
HMGB3-201ENST00000325307 SAT2Q96F10 170 aaPredicted RBP8.07□□□□□ -1.12
HMGB3-201ENST00000325307 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.07□□□□□ -1.12
HMGB3-201ENST00000325307 FLNAP21333 2647 aaKnown RBP8.07□□□□□ -1.12
HMGB3-201ENST00000325307 ST8SIA3O43173 380 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 SNRNP70P08621 437 aaKnown RBP8.06□□□□□ -1.12
HMGB3-201ENST00000325307 OR9G9P0C7N8 305 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 SAA1P0DJI8 122 aaPredicted RBP8.06□□□□□ -1.12
HMGB3-201ENST00000325307 HIST1H1BP16401 226 aaKnown RBP8.06□□□□□ -1.12
HMGB3-201ENST00000325307 CD81P60033 236 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 CDPF1Q6NVV7 123 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 RNF141Q8WVD5 230 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 A0A0U1RQK1 487 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 VENTXO95231 258 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 SLC25A6P12236 298 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 HOXA5P20719 270 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 CD1BP29016 333 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 BRS3P32247 399 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 PPT1P50897 306 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 PKIAP61925 76 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 PLGLAQ15195 96 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 VMA21Q3ZAQ7 101 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 RITA1Q96K30 269 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 TLN2Q9Y4G6 2542 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 SSSCA1O60232 199 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 IFNA17P01571 189 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 CDC34P49427 236 aaPredicted RBP8.06□□□□□ -1.12
HMGB3-201ENST00000325307 KLF17Q5JT82 389 aaPredicted RBP8.06□□□□□ -1.12
HMGB3-201ENST00000325307 RAB24Q969Q5 203 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 SMIM3Q9BZL3 60 aa8.06□□□□□ -1.12
HMGB3-201ENST00000325307 TRAV3A0A0B4J244 114 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 M0QZK8 103 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 TMEM50AO95807 157 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 STAG3L3P0CL85 134 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 LGALS7P47929 136 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 F2RL1P55085 397 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 AKR1C1Q04828 323 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 MMDQ15546 238 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 ZNF674Q2M3X9 581 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 CLCC1Q96S66 551 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 ARV1Q9H2C2 271 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 E5RGE8 158 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 MOSP00540 346 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 P0C879 139 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 CNTFRP26992 372 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 VAMP2P63027 116 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 SPINK9Q5DT21 86 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 VSTM2AQ8TAG5 236 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 CFHR4Q92496 578 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 ATG101Q9BSB4 218 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 HINT2Q9BX68 163 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 QTRT1Q9BXR0 403 aaKnown RBP8.05□□□□□ -1.12
HMGB3-201ENST00000325307 SOX21Q9Y651 276 aaPredicted RBP8.05□□□□□ -1.12
HMGB3-201ENST00000325307 FAM106CPP0CH98 169 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 OR2T10Q8NGZ9 312 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 SCRT1Q9BWW7 348 aa8.05□□□□□ -1.12
HMGB3-201ENST00000325307 NCBP2LA6PVI3 153 aaKnown RBP8.04□□□□□ -1.12
HMGB3-201ENST00000325307 CEBPZOSA8MTT3 80 aa8.04□□□□□ -1.12
HMGB3-201ENST00000325307 TAAR5O14804 337 aa8.04□□□□□ -1.12
HMGB3-201ENST00000325307 PPBPP02775 128 aa8.04□□□□□ -1.12
HMGB3-201ENST00000325307 RAB2AP61019 212 aa8.04□□□□□ -1.12
HMGB3-201ENST00000325307 AJUBAQ96IF1 538 aa8.04□□□□□ -1.12
HMGB3-201ENST00000325307 EAF1Q96JC9 268 aaPredicted RBP8.04□□□□□ -1.12
HMGB3-201ENST00000325307 KIAA1456Q9P272 454 aa8.04□□□□□ -1.12
HMGB3-201ENST00000325307 SVEP1Q4LDE5 3571 aa8.04□□□□□ -1.12
HMGB3-201ENST00000325307 IGSF23A1L1A6 192 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 227.3 ms