RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ANKRD55Q3KP44 614 aa14.63□□□□□ -0.07
LIME1-201ENST00000309546 Q56UQ5 140 aa14.63□□□□□ -0.07
LIME1-201ENST00000309546 CADM3Q8N126 398 aa14.63□□□□□ -0.07
LIME1-201ENST00000309546 OR4A16Q8NH70 328 aa14.63□□□□□ -0.07
LIME1-201ENST00000309546 SCARB1Q8WTV0 552 aa14.63□□□□□ -0.07
LIME1-201ENST00000309546 MRGPRFQ96AM1 343 aa14.63□□□□□ -0.07
LIME1-201ENST00000309546 C20orf24Q9BUV8 137 aa14.63□□□□□ -0.07
LIME1-201ENST00000309546 TMEM14BQ9NUH8 114 aa14.63□□□□□ -0.07
LIME1-201ENST00000309546 IGHV3OR16-8A0A075B7F1 116 aa14.62□□□□□ -0.07
LIME1-201ENST00000309546 GABARAPO95166 117 aa14.62□□□□□ -0.07
LIME1-201ENST00000309546 C8orf88P0DMB2 117 aa14.62□□□□□ -0.07
LIME1-201ENST00000309546 PGAM2P15259 253 aa14.62□□□□□ -0.07
LIME1-201ENST00000309546 UCP3P55916 312 aa14.62□□□□□ -0.07
LIME1-201ENST00000309546 OR1L6Q8NGR2 347 aa14.62□□□□□ -0.07
LIME1-201ENST00000309546 SEC22AQ96IW7 307 aa14.62□□□□□ -0.07
LIME1-201ENST00000309546 CHRDL1Q9BU40 450 aa14.62□□□□□ -0.07
LIME1-201ENST00000309546 FAM212BQ9NTI7 297 aaPredicted RBP14.62□□□□□ -0.07
LIME1-201ENST00000309546 EXTL2Q9UBQ6 330 aa14.62□□□□□ -0.07
LIME1-201ENST00000309546 KLK11Q9UBX7 282 aa14.62□□□□□ -0.07
LIME1-201ENST00000309546 TRAV25A0A0B4J276 109 aa14.61□□□□□ -0.07
LIME1-201ENST00000309546 K7EIM0 57 aa14.61□□□□□ -0.07
LIME1-201ENST00000309546 IGKV1-39P01597 117 aa14.61□□□□□ -0.07
LIME1-201ENST00000309546 IGKV1D-39P04432 117 aa14.61□□□□□ -0.07
LIME1-201ENST00000309546 CTF1Q16619 201 aa14.61□□□□□ -0.07
LIME1-201ENST00000309546 RNASE10Q5GAN6 216 aaKnown RBP14.61□□□□□ -0.07
LIME1-201ENST00000309546 GPR107Q5VW38 600 aa14.61□□□□□ -0.07
LIME1-201ENST00000309546 SPSB3Q6PJ21 355 aa14.61□□□□□ -0.07
LIME1-201ENST00000309546 MISP3Q96FF7 219 aa14.61□□□□□ -0.07
LIME1-201ENST00000309546 DAZ1Q9NQZ3 744 aaKnown RBP14.61□□□□□ -0.07
LIME1-201ENST00000309546 F8W735 103 aaPredicted RBP14.6□□□□□ -0.07
LIME1-201ENST00000309546 NDUFA4O00483 81 aa14.6□□□□□ -0.07
LIME1-201ENST00000309546 ZNF207O43670 478 aaKnown RBP14.6□□□□□ -0.07
LIME1-201ENST00000309546 ZNF182P17025 639 aaPredicted RBP14.6□□□□□ -0.07
LIME1-201ENST00000309546 PI3P19957 117 aa14.6□□□□□ -0.07
LIME1-201ENST00000309546 PPP5CP53041 499 aa14.6□□□□□ -0.07
LIME1-201ENST00000309546 OR1P1Q8NH06 330 aa14.6□□□□□ -0.07
LIME1-201ENST00000309546 OR52I2Q8NH67 350 aa14.6□□□□□ -0.07
LIME1-201ENST00000309546 GGTLC1Q9BX51 225 aa14.6□□□□□ -0.07
LIME1-201ENST00000309546 SACSQ9NZJ4 4579 aa14.59□□□□□ -0.07
LIME1-201ENST00000309546 CSMD3Q7Z407 3707 aa14.59□□□□□ -0.07
LIME1-201ENST00000309546 LCE6AA0A183 80 aa14.59□□□□□ -0.07
LIME1-201ENST00000309546 CD3DP04234 171 aa14.59□□□□□ -0.07
LIME1-201ENST00000309546 ADMP35318 185 aa14.59□□□□□ -0.07
LIME1-201ENST00000309546 OR2C3Q8N628 320 aa14.59□□□□□ -0.07
LIME1-201ENST00000309546 ATP6V0BQ99437 205 aa14.59□□□□□ -0.07
LIME1-201ENST00000309546 C5orf66Q9H5L9 145 aa14.59□□□□□ -0.07
LIME1-201ENST00000309546 UBQLN2Q9UHD9 624 aa14.59□□□□□ -0.07
LIME1-201ENST00000309546 TENM2Q9NT68 2774 aa14.59□□□□□ -0.07
LIME1-201ENST00000309546 LOC102724200A0A096LPH7 203 aaPredicted RBP14.58□□□□□ -0.08
LIME1-201ENST00000309546 PIGPP57054 158 aa14.58□□□□□ -0.08
LIME1-201ENST00000309546 PRCDQ00LT1 54 aa14.58□□□□□ -0.08
LIME1-201ENST00000309546 IZUMO4Q1ZYL8 232 aa14.58□□□□□ -0.08
LIME1-201ENST00000309546 SPINK9Q5DT21 86 aa14.58□□□□□ -0.08
LIME1-201ENST00000309546 ZNF486Q96H40 463 aaPredicted RBP14.58□□□□□ -0.08
LIME1-201ENST00000309546 SPAG8Q99932 426 aaPredicted RBP14.58□□□□□ -0.08
LIME1-201ENST00000309546 LYSTQ99698 3801 aa14.58□□□□□ -0.08
LIME1-201ENST00000309546 AKR1C2P52895 323 aa14.57□□□□□ -0.08
LIME1-201ENST00000309546 RND3P61587 244 aa14.57□□□□□ -0.08
LIME1-201ENST00000309546 LAMTOR1Q6IAA8 161 aa14.57□□□□□ -0.08
LIME1-201ENST00000309546 LHFPL1Q86WI0 220 aa14.57□□□□□ -0.08
LIME1-201ENST00000309546 ARRDC1Q8N5I2 433 aa14.57□□□□□ -0.08
LIME1-201ENST00000309546 PINX1Q96BK5 328 aaKnown RBP14.57□□□□□ -0.08
LIME1-201ENST00000309546 MTFP1Q9UDX5 166 aa14.57□□□□□ -0.08
LIME1-201ENST00000309546 TSPAN4O14817 238 aa14.56□□□□□ -0.08
LIME1-201ENST00000309546 NUPL2O15504 423 aaKnown RBP14.56□□□□□ -0.08
LIME1-201ENST00000309546 RGS5O15539 181 aa14.56□□□□□ -0.08
LIME1-201ENST00000309546 MT-CO2P00403 227 aa14.56□□□□□ -0.08
LIME1-201ENST00000309546 IGHV3-48P01763 117 aa14.56□□□□□ -0.08
LIME1-201ENST00000309546 MFAP4P55083 255 aa14.56□□□□□ -0.08
LIME1-201ENST00000309546 HSPE1P61604 102 aaKnown RBP14.56□□□□□ -0.08
LIME1-201ENST00000309546 ERHP84090 104 aaKnown RBP14.56□□□□□ -0.08
LIME1-201ENST00000309546 SCGB2B2Q4G0G5 96 aa14.56□□□□□ -0.08
LIME1-201ENST00000309546 OR4D10Q8NGI6 311 aa14.56□□□□□ -0.08
LIME1-201ENST00000309546 TP53RKQ96S44 253 aa14.56□□□□□ -0.08
LIME1-201ENST00000309546 ABHD1Q96SE0 405 aa14.56□□□□□ -0.08
LIME1-201ENST00000309546 MRPS26Q9BYN8 205 aaKnown RBP14.56□□□□□ -0.08
LIME1-201ENST00000309546 I3L2K1 104 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 YIF1AO95070 293 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 IGKV1-5P01602 117 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 CTSGP08311 255 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 TBPP20226 339 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 TAS2R19P59542 299 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 RELQ04864 619 aaPredicted RBP14.55□□□□□ -0.08
LIME1-201ENST00000309546 TRIM16LQ309B1 348 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 GPR141Q7Z602 305 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 ZNF114Q8NC26 417 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 IL17DQ8TAD2 202 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 C15orf40Q8WUR7 153 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 COPZ2Q9P299 210 aa14.55□□□□□ -0.08
LIME1-201ENST00000309546 IGHV3-49A0A0A0MS15 119 aa14.54□□□□□ -0.08
LIME1-201ENST00000309546 C3orf85A0A1B0GTC6 90 aa14.54□□□□□ -0.08
LIME1-201ENST00000309546 C15orf62A8K5M9 175 aa14.54□□□□□ -0.08
LIME1-201ENST00000309546 K7EMT4 169 aa14.54□□□□□ -0.08
LIME1-201ENST00000309546 GNG7O60262 68 aa14.54□□□□□ -0.08
LIME1-201ENST00000309546 SLC35G3Q8N808 338 aa14.54□□□□□ -0.08
LIME1-201ENST00000309546 CCDC71LQ8N9Z2 235 aa14.54□□□□□ -0.08
LIME1-201ENST00000309546 OR4C46A6NHA9 309 aa14.53□□□□□ -0.08
LIME1-201ENST00000309546 RAB3DO95716 219 aa14.53□□□□□ -0.08
LIME1-201ENST00000309546 CTSDP07339 412 aaPredicted RBP14.53□□□□□ -0.08
LIME1-201ENST00000309546 SP6Q3SY56 376 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms