RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 PYGO2Q9BRQ0 406 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 DOK5Q9P104 306 aa13.66□□□□□ -0.22
CPSF4-201ENST00000292476 SAA2-SAA4A0A096LPE2 208 aa13.65□□□□□ -0.22
CPSF4-201ENST00000292476 PRSS46E5RG02 174 aa13.65□□□□□ -0.22
CPSF4-201ENST00000292476 PDE6DO43924 150 aa13.65□□□□□ -0.22
CPSF4-201ENST00000292476 SAA2P0DJI9 122 aaPredicted RBP13.65□□□□□ -0.22
CPSF4-201ENST00000292476 GNG10P50151 68 aa13.65□□□□□ -0.22
CPSF4-201ENST00000292476 POU2AF1Q16633 256 aa13.65□□□□□ -0.22
CPSF4-201ENST00000292476 BSXQ3C1V8 233 aa13.65□□□□□ -0.22
CPSF4-201ENST00000292476 NANPQ8TBE9 248 aa13.65□□□□□ -0.22
CPSF4-201ENST00000292476 LEAP2Q969E1 77 aa13.65□□□□□ -0.22
CPSF4-201ENST00000292476 TMEM186Q96B77 213 aa13.65□□□□□ -0.22
CPSF4-201ENST00000292476 ANAPC16Q96DE5 110 aa13.65□□□□□ -0.22
CPSF4-201ENST00000292476 OR51M1Q9H341 326 aa13.65□□□□□ -0.22
CPSF4-201ENST00000292476 FOXA2Q9Y261 457 aaPredicted RBP13.65□□□□□ -0.22
CPSF4-201ENST00000292476 LOC105371242A0A075B767 164 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 FNDC10F2Z333 226 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 NDUFS8O00217 210 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 SLC31A2O15432 143 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 HIST1H2BKO60814 126 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 IGHV3-7P01780 117 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 HIST1H2BJP06899 126 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 HIST1H2BOP23527 126 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 HIST1H2BBP33778 126 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 PRRX1P54821 245 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 HIST1H2BDP58876 126 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 HIST1H2BCP62807 126 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 HIST2H2BEQ16778 126 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.64□□□□□ -0.23
CPSF4-201ENST00000292476 SLC16A13Q7RTY0 426 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 OR10X1Q8NGY0 326 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 HIST1H2BHQ93079 126 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 HIST1H2BNQ99877 126 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 HIST1H2BMQ99879 126 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 TMEM133Q9H2Q1 129 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 PARLQ9H300 379 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 TMEM140Q9NV12 185 aa13.64□□□□□ -0.23
CPSF4-201ENST00000292476 CCDC168Q8NDH2 2452 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 C15orf61A6NNL5 157 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 J3QR06 171 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 IFNA10P01566 189 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 S100PP25815 95 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 LINC00205P59089 165 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 RPL23P62829 140 aaKnown RBP13.63□□□□□ -0.23
CPSF4-201ENST00000292476 ADIRFQ15847 76 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 RPL39P5Q59GN2 51 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 HEYLQ9NQ87 328 aaPredicted RBP13.63□□□□□ -0.23
CPSF4-201ENST00000292476 F6UZH7 168 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 M0R1W7 72 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 NDUFS7O75251 213 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 TRGC2P03986 189 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 NDUFA6P56556 154 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 C1orf122Q6ZSJ8 110 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 ABHD12Q8N2K0 398 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 OR4F5Q8NH21 305 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 OR4F4Q96R69 305 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 SRD5A3Q9H8P0 318 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 NIT2Q9NQR4 276 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 TCF19Q9Y242 345 aa13.63□□□□□ -0.23
CPSF4-201ENST00000292476 MYO9AB2RTY4 2548 aa13.62□□□□□ -0.23
CPSF4-201ENST00000292476 PHOX2AO14813 284 aa13.62□□□□□ -0.23
CPSF4-201ENST00000292476 PFN1P07737 140 aaKnown RBP13.62□□□□□ -0.23
CPSF4-201ENST00000292476 S100A2P29034 98 aa13.62□□□□□ -0.23
CPSF4-201ENST00000292476 ATP5IP56385 69 aaPredicted RBP13.62□□□□□ -0.23
CPSF4-201ENST00000292476 RTL8BQ17RB0 113 aa13.62□□□□□ -0.23
CPSF4-201ENST00000292476 SPINK9Q5DT21 86 aa13.62□□□□□ -0.23
CPSF4-201ENST00000292476 DNLZQ5SXM8 178 aa13.62□□□□□ -0.23
CPSF4-201ENST00000292476 ZNF833PQ6ZTB9 187 aa13.62□□□□□ -0.23
CPSF4-201ENST00000292476 OR5B12Q96R08 314 aa13.62□□□□□ -0.23
CPSF4-201ENST00000292476 PIMREGQ9BSJ6 248 aa13.62□□□□□ -0.23
CPSF4-201ENST00000292476 TMEM14BQ9NUH8 114 aa13.62□□□□□ -0.23
CPSF4-201ENST00000292476 GAR1Q9NY12 217 aaKnown RBP13.62□□□□□ -0.23
CPSF4-201ENST00000292476 PPP1R2P9O14990 202 aa13.61□□□□□ -0.23
CPSF4-201ENST00000292476 IGHV4-39P01824 125 aa13.61□□□□□ -0.23
CPSF4-201ENST00000292476 FABP1P07148 127 aa13.61□□□□□ -0.23
CPSF4-201ENST00000292476 CD99P14209 185 aa13.61□□□□□ -0.23
CPSF4-201ENST00000292476 TREML4Q6UXN2 200 aa13.61□□□□□ -0.23
CPSF4-201ENST00000292476 C16orf82Q7Z2V1 217 aa13.61□□□□□ -0.23
CPSF4-201ENST00000292476 C11orf42Q8N5U0 333 aa13.61□□□□□ -0.23
CPSF4-201ENST00000292476 KIR3DL3Q8N743 410 aa13.61□□□□□ -0.23
CPSF4-201ENST00000292476 RPUSD4Q96CM3 377 aaKnown RBP13.61□□□□□ -0.23
CPSF4-201ENST00000292476 BTF3L4Q96K17 158 aa13.61□□□□□ -0.23
CPSF4-201ENST00000292476 AMMECR1Q9Y4X0 333 aaPredicted RBP13.61□□□□□ -0.23
CPSF4-201ENST00000292476 USF3Q68DE3 2245 aa13.61□□□□□ -0.23
CPSF4-201ENST00000292476 A0A1W2PPV4 95 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 C11orf94C9JXX5 98 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 H7BYZ3 331 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 ENSAO43768 121 aaKnown RBP13.6□□□□□ -0.23
CPSF4-201ENST00000292476 PAGE4O60829 102 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 HRASP01112 189 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 PAX1P15863 534 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 SRP14P37108 136 aaKnown RBP13.6□□□□□ -0.23
CPSF4-201ENST00000292476 ZNF137PP52743 207 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 DSCR9P59020 149 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 HSPE1P61604 102 aaKnown RBP13.6□□□□□ -0.23
CPSF4-201ENST00000292476 BEND2Q8NDZ0 799 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 GGTLC1Q9BX51 225 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 CLEC7AQ9BXN2 247 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 NPVFQ9HCQ7 196 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 GSN-AS1Q9NRJ2 163 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms