RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 BMI1P35226 326 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 HRH1P35367 487 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 LSM3P62310 102 aaKnown RBP9.48□□□□□ -0.89
CD44-203ENST00000278386 ODF3L2Q3SX64 289 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 KCTD21Q4G0X4 260 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 DHRS11Q6UWP2 260 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 Q6ZWC4 215 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 STPG3Q8N7X2 389 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 OR6F1Q8NGZ6 308 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 SCARB1Q8WTV0 552 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 MISP3Q96FF7 219 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 TSC22D3Q99576 134 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 FKBP11Q9NYL4 201 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 ANAPC10Q9UM13 185 aa9.48□□□□□ -0.89
CD44-203ENST00000278386 K7EIM0 57 aa9.47□□□□□ -0.89
CD44-203ENST00000278386 UBE2CO00762 179 aa9.47□□□□□ -0.89
CD44-203ENST00000278386 NUPL2O15504 423 aaKnown RBP9.47□□□□□ -0.89
CD44-203ENST00000278386 HLA-DMAP28067 261 aa9.47□□□□□ -0.89
CD44-203ENST00000278386 PRSS3P35030 304 aa9.47□□□□□ -0.89
CD44-203ENST00000278386 ADMP35318 185 aa9.47□□□□□ -0.89
CD44-203ENST00000278386 TSPAN5P62079 268 aa9.47□□□□□ -0.89
CD44-203ENST00000278386 EWSR1Q01844 656 aaKnown RBP eCLIP9.47□□□□□ -0.89
CD44-203ENST00000278386 RELQ04864 619 aaPredicted RBP9.47□□□□□ -0.89
CD44-203ENST00000278386 TNFRSF9Q07011 255 aa9.47□□□□□ -0.89
CD44-203ENST00000278386 WFDC3Q8IUB2 231 aa9.47□□□□□ -0.89
CD44-203ENST00000278386 OR5B3Q8NH48 314 aa9.47□□□□□ -0.89
CD44-203ENST00000278386 ATP6V0BQ99437 205 aa9.47□□□□□ -0.89
CD44-203ENST00000278386 C6orf62Q9GZU0 229 aaPredicted RBP9.47□□□□□ -0.89
CD44-203ENST00000278386 VCX3AQ9NNX9 186 aa9.47□□□□□ -0.89
CD44-203ENST00000278386 IGKV3-7A0A075B6H7 116 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 IGHV3-49A0A0A0MS15 119 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 KIR2DL5BA0A0G2JN68 375 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 KIR2DL5BA0A0G2JPC4 375 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 DBX1A6NMT0 343 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 C15orf62A8K5M9 175 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 F8W735 103 aaPredicted RBP9.46□□□□□ -0.9
CD44-203ENST00000278386 YIF1AO95070 293 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 NAT1P18440 290 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 RPS19P39019 145 aaKnown RBP9.46□□□□□ -0.9
CD44-203ENST00000278386 TFPI2P48307 235 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 TBC1D26Q86UD7 250 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 KIR2DL5AQ8N109 375 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 OR1P1Q8NH06 330 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 OR4A16Q8NH70 328 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 KIR2DL5BQ8NHK3 375 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 GALNT14Q96FL9 552 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 TMEM14BQ9NUH8 114 aa9.46□□□□□ -0.9
CD44-203ENST00000278386 IGHV7-4-1A0A0J9YVY3 117 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 K7EMT4 169 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 EIF4EP06730 217 aaKnown RBP9.45□□□□□ -0.9
CD44-203ENST00000278386 FCGR2BP31994 310 aaPredicted RBP9.45□□□□□ -0.9
CD44-203ENST00000278386 MFAP4P55083 255 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 H2BFWTQ7Z2G1 175 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 SNX29P2Q8IUI4 249 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 APRG1Q8IVJ8 170 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 TMEM217Q8N7C4 229 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 SLC25A46Q96AG3 418 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 PINX1Q96BK5 328 aaKnown RBP9.45□□□□□ -0.9
CD44-203ENST00000278386 RNF183Q96D59 192 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 CMTM3Q96MX0 182 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 RNF2Q99496 336 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 KMT2AQ03164 3969 aa9.45□□□□□ -0.9
CD44-203ENST00000278386 IGHV3OR16-13A0A075B7E8 117 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 IGHV3-74A0A0B4J1X5 117 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 SMIM31A0A1B0GVY4 71 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 GNG7O60262 68 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 CTSGP08311 255 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 LPCAT3Q6P1A2 487 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 CEMP1Q6PRD7 247 aaPredicted RBP9.44□□□□□ -0.9
CD44-203ENST00000278386 CADM3Q8N126 398 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 TMEM116Q8NCL8 245 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 MRGPRFQ96AM1 343 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 RHPN1-AS1Q9BWJ2 59 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 COMMD3Q9UBI1 195 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 SMPXQ9UHP9 88 aa9.44□□□□□ -0.9
CD44-203ENST00000278386 KLK5Q9Y337 293 aaPredicted RBP9.44□□□□□ -0.9
CD44-203ENST00000278386 FRAS1Q86XX4 4008 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 CHEK1O14757 476 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 MT-CO2P00403 227 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 IGHV3-48P01763 117 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 RCVRNP35243 200 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 PRCDQ00LT1 54 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 ZNF124Q15973 351 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 SPINK9Q5DT21 86 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 GPX8Q8TED1 209 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 YIPF6Q96EC8 236 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 SEC22AQ96IW7 307 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 GINS3Q9BRX5 216 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 MAP6D1Q9H9H5 199 aa9.43□□□□□ -0.9
CD44-203ENST00000278386 FAM212BQ9NTI7 297 aaPredicted RBP9.43□□□□□ -0.9
CD44-203ENST00000278386 A0A087WXM4 84 aa9.42□□□□□ -0.9
CD44-203ENST00000278386 I3L2K1 104 aa9.42□□□□□ -0.9
CD44-203ENST00000278386 IGKV1-39P01597 117 aa9.42□□□□□ -0.9
CD44-203ENST00000278386 IGKV1D-39P04432 117 aa9.42□□□□□ -0.9
CD44-203ENST00000278386 PGAM2P15259 253 aa9.42□□□□□ -0.9
CD44-203ENST00000278386 ERHP84090 104 aaKnown RBP9.42□□□□□ -0.9
CD44-203ENST00000278386 RNASE12Q5GAN4 147 aaKnown RBP9.42□□□□□ -0.9
CD44-203ENST00000278386 LYSMD2Q8IV50 215 aa9.42□□□□□ -0.9
CD44-203ENST00000278386 GBGT1Q8N5D6 347 aa9.42□□□□□ -0.9
CD44-203ENST00000278386 SLC35G3Q8N808 338 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms