RNA–Protein interactions for RNA: ENST00000266085.6

TIMP3-201, Transcript of TIMP metallopeptidase inhibitor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP3, Length 4,603 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3-201ENST00000266085 GOLT1AQ6ZVE7 132 aa12.86□□□□□ -0.35
TIMP3-201ENST00000266085 IGHV3OR16-13A0A075B7E8 117 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 IGHV3-74A0A0B4J1X5 117 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 THBDP07204 575 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 NBEAP1P0C6P0 100 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 SAA1P0DJI8 122 aaPredicted RBP12.85□□□□□ -0.35
TIMP3-201ENST00000266085 CENPVQ7Z7K6 275 aaPredicted RBP12.85□□□□□ -0.35
TIMP3-201ENST00000266085 OR4B1Q8NGF8 309 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 TFF3Q07654 80 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 ZNF525Q8N782 197 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 C18orf12Q96KH6 178 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 S4R3C0 116 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 FRMPD3Q5JV73 1810 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 G0S2P27469 103 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 MBNL2Q5VZF2 373 aaKnown RBP12.85□□□□□ -0.35
TIMP3-201ENST00000266085 C21orf62Q9NYP8 219 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 OTOGLQ3ZCN5 2332 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 LRRK1Q38SD2 2015 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 J3QR89 54 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 WISP1O95388 367 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 ACAA1P09110 424 aaPredicted RBP12.85□□□□□ -0.35
TIMP3-201ENST00000266085 ID3Q02535 119 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 ZNF474Q6S9Z5 364 aaPredicted RBP12.85□□□□□ -0.35
TIMP3-201ENST00000266085 RNF144BQ7Z419 303 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 OR8A1Q8NGG7 326 aa12.85□□□□□ -0.35
TIMP3-201ENST00000266085 PSPNO60542 156 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 ZNF672Q499Z4 452 aaPredicted RBP12.84□□□□□ -0.35
TIMP3-201ENST00000266085 LHFPL1Q86WI0 220 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 RNASEH2CQ8TDP1 164 aaKnown RBP12.84□□□□□ -0.35
TIMP3-201ENST00000266085 SRSF12Q8WXF0 261 aaKnown RBP12.84□□□□□ -0.35
TIMP3-201ENST00000266085 FBXL7Q9UJT9 491 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 LILRA1O75019 489 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 ZNF324BQ6AW86 544 aaPredicted RBP12.84□□□□□ -0.35
TIMP3-201ENST00000266085 CSPG4Q6UVK1 2322 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 MYOZ3Q8TDC0 251 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 AUP1Q9Y679 476 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 H0YIZ8 118 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 UPK2O00526 184 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 GNLYP22749 145 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 DUTP33316 252 aaKnown RBP12.84□□□□□ -0.35
TIMP3-201ENST00000266085 NCOR2Q9Y618 2525 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 MALRD1Q5VYJ5 2156 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 TMEM42Q69YG0 159 aa12.84□□□□□ -0.35
TIMP3-201ENST00000266085 K7ENP7 123 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 RAMP3O60896 148 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 CKS2P33552 79 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 GPX4P36969 197 aaPredicted RBP12.83□□□□□ -0.36
TIMP3-201ENST00000266085 DLX6P56179 175 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 TMEM144Q7Z5S9 345 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 DTX1Q86Y01 620 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 ARPC1AQ92747 370 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 CD24P25063 80 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 CENPWQ5EE01 88 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 CLDND2Q8NHS1 167 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 VN1R17PQ8TDU5 208 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 HIST1H2BAQ96A08 127 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 PROK2Q9HC23 129 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 A0A087X0M5 115 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 A0A1B0GX30 115 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 SNCGO76070 127 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 VENTXO95231 258 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 DDB2Q92466 427 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 CDC42EP3Q9UKI2 254 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 FOXA2Q9Y261 457 aaPredicted RBP12.83□□□□□ -0.36
TIMP3-201ENST00000266085 PLCE1Q9P212 2302 aa12.83□□□□□ -0.36
TIMP3-201ENST00000266085 LOC389332A0A1B0GUA5 103 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 M0R143 59 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 ETV2O00321 342 aaPredicted RBP12.82□□□□□ -0.36
TIMP3-201ENST00000266085 GCGP01275 180 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 RPS20P60866 119 aaKnown RBP12.82□□□□□ -0.36
TIMP3-201ENST00000266085 HERVK_113P61574 105 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 ICAM4Q14773 271 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 SCGB1D4Q6XE38 83 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 LRTM2Q8N967 370 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 BET1LQ9NYM9 111 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 RPUSD1Q9UJJ7 312 aaKnown RBP12.82□□□□□ -0.36
TIMP3-201ENST00000266085 SCGB1C2P0DMR2 95 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 PPP1R27Q86WC6 154 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 PGLYRP4Q96LB8 373 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 ANKHD1Q8IWZ3 2542 aaKnown RBP12.82□□□□□ -0.36
TIMP3-201ENST00000266085 TGIF2-C20orf24A0A0A6YYL0 155 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 C15orf61A6NNL5 157 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 CGAP01215 116 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 SRSF7Q16629 238 aaKnown RBP eCLIP12.82□□□□□ -0.36
TIMP3-201ENST00000266085 ZNF524Q96C55 264 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 PTPN13Q12923 2485 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 A0A0G2JLM5 398 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 NBR2O15453 112 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 NAPSAO96009 420 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 CD81P60033 236 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 PAM16Q9Y3D7 125 aa12.82□□□□□ -0.36
TIMP3-201ENST00000266085 CD99P14209 185 aa12.81□□□□□ -0.36
TIMP3-201ENST00000266085 CX3CL1P78423 397 aa12.81□□□□□ -0.36
TIMP3-201ENST00000266085 PRR30Q53SZ7 412 aaPredicted RBP12.81□□□□□ -0.36
TIMP3-201ENST00000266085 SAPCD1Q5SSQ6 148 aa12.81□□□□□ -0.36
TIMP3-201ENST00000266085 SFRP2Q96HF1 295 aa12.81□□□□□ -0.36
TIMP3-201ENST00000266085 MRPL18Q9H0U6 180 aaKnown RBP12.81□□□□□ -0.36
TIMP3-201ENST00000266085 PHLDA3Q9Y5J5 127 aa12.81□□□□□ -0.36
TIMP3-201ENST00000266085 IGHV3-49A0A0A0MS15 119 aa12.81□□□□□ -0.36
TIMP3-201ENST00000266085 DIRC3C9JPN6 131 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms