RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NTN1O95631 604 aa11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 UBE2WQ96B02 151 aa11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 CT62P0C5K7 136 aa11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 ALPK2Q86TB3 2170 aa11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 MESP2Q0VG99 397 aa11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 C16orf47Q6ZP98 133 aaPredicted RBP11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 SLC50A1Q9BRV3 221 aa11.88□□□□□ -0.51
CCDC88A-201ENST00000263630 B9A039 149 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 HYAL3O43820 417 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 CCL3P10147 92 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 PLSCR4Q9NRQ2 329 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 GZMBP10144 247 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 TMEM258P61165 79 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 DRAM1Q8N682 238 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 TPRX1Q8N7U7 411 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 CHAC1Q9BUX1 264 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 RSPO3Q9BXY4 272 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 VSIG10L2P0DP72 767 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 FHL5Q5TD97 284 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 AQP3Q92482 292 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 CHCHD5Q9BSY4 110 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 ABCA4P78363 2273 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 A0A087WX48 190 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 SPINK2P20155 84 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 PEAR1Q5VY43 1037 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 FOXD3Q9UJU5 478 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 ESDP10768 282 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 CACNG8Q8WXS5 425 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 TRAV9-2A0A087WT02 112 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 IGHV1-69-2A0A0G2JMI3 117 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 A0A1W2PPC1 479 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 LAGE3Q14657 143 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 C9orf153Q5TBE3 101 aa11.87□□□□□ -0.51
CCDC88A-201ENST00000263630 PLEKHB2Q96CS7 222 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 PLCH1Q4KWH8 1693 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 Q9H3A6 140 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 LINC01555Q8NAE3 123 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 GSN-AS1Q9NRJ2 163 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 FOXA2Q9Y261 457 aaPredicted RBP11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 OSR1Q8TAX0 266 aaPredicted RBP11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 ABCA3Q99758 1704 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 RGPD3A6NKT7 1758 aaPredicted RBP11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 IGKV1D-42A0A075B6H8 117 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 IGHV5-10-1A0A0J9YXX1 117 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 OTORQ9NRC9 128 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 PHF3Q92576 2039 aaKnown RBP11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 PSG4Q00888 419 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 C21orf62Q9NYP8 219 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 TRIOBPQ9H2D6 2365 aa11.86□□□□□ -0.51
CCDC88A-201ENST00000263630 THADAQ6YHU6 1953 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 IGHV1OR15-9A0A0B4J2B8 117 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 RHOGP84095 191 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 WNT2BQ93097 391 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 FBXL7Q9UJT9 491 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 FUT5Q11128 374 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 FAM19A2Q8N3H0 131 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 IMMP2LQ96T52 175 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 ATXN7O15265 892 aaPredicted RBP11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 PLA2G10O15496 165 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 DLL3Q9NYJ7 618 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 ATAD5Q96QE3 1844 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 PROB1E7EW31 1015 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 H3BTX0 84 aa11.85□□□□□ -0.51
CCDC88A-201ENST00000263630 COL9A1P20849 921 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 VDAC2P45880 294 aaPredicted RBP11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 A0A1W2PRS3 328 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 PNKDQ8N490 385 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 EP300Q09472 2414 aaPredicted RBP11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 PPP1R27Q86WC6 154 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 ALS2Q96Q42 1657 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 IGHV3-66A0A0C4DH42 116 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 NOVP48745 357 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 IFITM2Q01629 132 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 DYSFO75923 2080 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 CGAP01215 116 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 FDCSPQ8NFU4 85 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 NRN1Q9NPD7 142 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 SNHG12Q9BXW3 62 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 GNB1LQ9BYB4 327 aa11.84□□□□□ -0.51
CCDC88A-201ENST00000263630 FGF11Q92914 225 aa11.83□□□□□ -0.51
CCDC88A-201ENST00000263630 EGR4Q05215 589 aa11.83□□□□□ -0.52
CCDC88A-201ENST00000263630 KCNK17Q96T54 332 aa11.83□□□□□ -0.52
CCDC88A-201ENST00000263630 DOCK3Q8IZD9 2030 aa11.83□□□□□ -0.52
CCDC88A-201ENST00000263630 PRTN3P24158 256 aa11.83□□□□□ -0.52
CCDC88A-201ENST00000263630 RASL10AQ92737 203 aa11.83□□□□□ -0.52
CCDC88A-201ENST00000263630 KIAA0040Q15053 153 aa11.83□□□□□ -0.52
CCDC88A-201ENST00000263630 ZIC1Q15915 447 aa11.83□□□□□ -0.52
CCDC88A-201ENST00000263630 GAGE2AQ6NT46 116 aa11.83□□□□□ -0.52
CCDC88A-201ENST00000263630 OR13A1Q8NGR1 328 aa11.83□□□□□ -0.52
CCDC88A-201ENST00000263630 OR5P3Q8WZ94 311 aa11.83□□□□□ -0.52
CCDC88A-201ENST00000263630 DDX60LQ5H9U9 1706 aaKnown RBP11.83□□□□□ -0.52
CCDC88A-201ENST00000263630 GTF3AQ92664 365 aaKnown RBP11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 RBM38Q9H0Z9 239 aaKnown RBP11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 CD300CQ08708 224 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 ATP5L2Q7Z4Y8 100 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 UPK2O00526 184 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 CXCL16Q9H2A7 254 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 IFI27L2Q9H2X8 130 aa11.82□□□□□ -0.52
CCDC88A-201ENST00000263630 MRPS18AQ9NVS2 196 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms