RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TGFAP01135 160 aa16.1■□□□□ 0.17
UPF1-201ENST00000262803 CD5P06127 495 aa16.1■□□□□ 0.17
UPF1-201ENST00000262803 TRAV14DV4A0A0A6YYC5 116 aa16.1■□□□□ 0.17
UPF1-201ENST00000262803 TMEM136Q6ZRR5 245 aa16.1■□□□□ 0.17
UPF1-201ENST00000262803 ZNF837Q96EG3 531 aaPredicted RBP16.1■□□□□ 0.17
UPF1-201ENST00000262803 SRIP30626 198 aa16.1■□□□□ 0.17
UPF1-201ENST00000262803 ICAM4Q14773 271 aa16.1■□□□□ 0.17
UPF1-201ENST00000262803 KIAA1644Q3SXP7 199 aa16.1■□□□□ 0.17
UPF1-201ENST00000262803 DTX2Q86UW9 622 aa16.1■□□□□ 0.17
UPF1-201ENST00000262803 PATJQ8NI35 1801 aa16.1■□□□□ 0.17
UPF1-201ENST00000262803 LYPD3O95274 346 aa16.09■□□□□ 0.17
UPF1-201ENST00000262803 RPL39P5Q59GN2 51 aa16.09■□□□□ 0.17
UPF1-201ENST00000262803 CENPWQ5EE01 88 aa16.09■□□□□ 0.17
UPF1-201ENST00000262803 CNOT1A5YKK6 2376 aaKnown RBP16.09■□□□□ 0.17
UPF1-201ENST00000262803 XIRP1Q702N8 1843 aaKnown RBP16.09■□□□□ 0.17
UPF1-201ENST00000262803 THBDP07204 575 aa16.09■□□□□ 0.17
UPF1-201ENST00000262803 ASCL2Q99929 193 aa16.09■□□□□ 0.17
UPF1-201ENST00000262803 DDTP30046 118 aa16.09■□□□□ 0.17
UPF1-201ENST00000262803 A0A087WV48 116 aa16.09■□□□□ 0.17
UPF1-201ENST00000262803 PQLC2LA1A4F0 135 aa16.09■□□□□ 0.17
UPF1-201ENST00000262803 OTORQ9NRC9 128 aa16.09■□□□□ 0.17
UPF1-201ENST00000262803 ESPL1Q14674 2120 aa16.09■□□□□ 0.17
UPF1-201ENST00000262803 CACNA1DQ01668 2161 aa16.08■□□□□ 0.17
UPF1-201ENST00000262803 IGHV3-48P01763 117 aa16.08■□□□□ 0.17
UPF1-201ENST00000262803 NEUROG1Q92886 237 aa16.08■□□□□ 0.17
UPF1-201ENST00000262803 FBLN5Q9UBX5 448 aa16.08■□□□□ 0.17
UPF1-201ENST00000262803 MTCL1Q9Y4B5 1905 aaKnown RBP16.08■□□□□ 0.17
UPF1-201ENST00000262803 PROB1E7EW31 1015 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 PEX7O00628 323 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 ITLN2Q8WWU7 325 aaPredicted RBP16.08■□□□□ 0.16
UPF1-201ENST00000262803 PRR32B1ATL7 298 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 LHX2P50458 406 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 RALGAPA2Q2PPJ7 1873 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 C20orf204Q6ZNR8 217 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 PRDM6Q9NQX0 595 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 H3BTX0 84 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 RRHO14718 337 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 CFAP161Q6P656 301 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 CRIPAKQ8N1N5 446 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 FLVCR1-AS1Q8TAF5 88 aa16.08■□□□□ 0.16
UPF1-201ENST00000262803 LCTP09848 1927 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 TCF21O43680 179 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 STAG3L3P0CL85 134 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 PSG7Q13046 419 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 NUDT10Q8NFP7 164 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 OR52E5Q8NH55 327 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 MRPL13Q9BYD1 178 aaKnown RBP16.07■□□□□ 0.16
UPF1-201ENST00000262803 A0A0G2JMM0 328 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 A0A1W2PPB8 328 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 A0A1W2PRS3 328 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 KIR3DP1A8MWS1 328 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 FOXA2Q9Y261 457 aaPredicted RBP16.07■□□□□ 0.16
UPF1-201ENST00000262803 OOSP1A8MZH6 123 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 FAM216BQ8N7L0 139 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 PSME4Q14997 1843 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 CHD5Q8TDI0 1954 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 GRIFINA4D1Z8 144 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 C9orf106Q8NAJ2 232 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 WFIKKN1Q96NZ8 548 aa16.07■□□□□ 0.16
UPF1-201ENST00000262803 IGHV3OR16-10A0A075B7F0 116 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 J3QRE1 110 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 LTBRP36941 435 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 ZFP36L1Q07352 338 aaKnown RBP16.06■□□□□ 0.16
UPF1-201ENST00000262803 OR13A1Q8NGR1 328 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 TMEM133Q9H2Q1 129 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 LOC102724200A0A096LPH7 203 aaPredicted RBP16.06■□□□□ 0.16
UPF1-201ENST00000262803 RBMY1BA6NDE4 496 aaKnown RBP16.06■□□□□ 0.16
UPF1-201ENST00000262803 RBMY1EA6NEQ0 496 aaKnown RBP16.06■□□□□ 0.16
UPF1-201ENST00000262803 RBMY1DP0C7P1 496 aaKnown RBP16.06■□□□□ 0.16
UPF1-201ENST00000262803 RBMY1A1P0DJD3 496 aaKnown RBP16.06■□□□□ 0.16
UPF1-201ENST00000262803 RBMY1CP0DJD4 496 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 PEAR1Q5VY43 1037 aaPredicted RBP16.06■□□□□ 0.16
UPF1-201ENST00000262803 COLCA1Q6ZS62 124 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 C19orf67A6NJJ6 358 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 UPK2O00526 184 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 ZNF414Q96IQ9 312 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 LINC01587Q99440 93 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 NEU1Q99519 415 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 MRPL20Q9BYC9 149 aaKnown RBP16.06■□□□□ 0.16
UPF1-201ENST00000262803 A0A1B0GUT8 65 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 CACNG7P62955 275 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 ZNF600Q6ZNG1 722 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 IL36BQ9NZH7 164 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 SPTBN2O15020 2390 aa16.06■□□□□ 0.16
UPF1-201ENST00000262803 AKAP6Q13023 2319 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 TRAV24A0A0B4J272 114 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 TBR1Q16650 682 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 MTURNQ8N3F0 131 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 UMODP07911 640 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 GPR183P32249 361 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 TIMP3P35625 211 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 TMEM105Q8N8V8 129 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 TMEM167AQ8TBQ9 72 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 WDR82Q6UXN9 313 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 TMEM144Q7Z5S9 345 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 RPP21Q9H633 154 aaKnown RBP16.05■□□□□ 0.16
UPF1-201ENST00000262803 PDCD11Q14690 1871 aaKnown RBP16.05■□□□□ 0.16
UPF1-201ENST00000262803 KIF26BQ2KJY2 2108 aa16.05■□□□□ 0.16
UPF1-201ENST00000262803 TRGV11A0A075B6L2 103 aa16.04■□□□□ 0.16
UPF1-201ENST00000262803 C17orf98A8MV24 154 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms