RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 AUNIPQ9H7T9 357 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 COLQQ9Y215 455 aaPredicted RBP2.4□□□□□ -2.02
SCN1A-219ENST00000641575 FAM157AC9JC47 383 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 K7N7A8 449 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 ECSCRQ19T08 205 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 DLEU7Q6UYE1 221 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 CBLL1Q75N03 491 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 NFE4Q86UQ8 179 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 UMODL1-AS1Q8N2C9 162 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM256Q8N2U0 113 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 FAM181AQ8N9Y4 354 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 NPY6RQ99463 290 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 HSD17B14Q9BPX1 270 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 ZBP1Q9H171 429 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 MS4A6AQ9H2W1 248 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 PDLIM7Q9NR12 457 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 GGTLC3B5MD39 225 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 C2CD4DB7Z1M9 353 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 LGALS1P09382 135 aaKnown RBP2.4□□□□□ -2.02
SCN1A-219ENST00000641575 GLI4P10075 376 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 HOXB3P14651 431 aaPredicted RBP2.4□□□□□ -2.02
SCN1A-219ENST00000641575 EVX1P49640 407 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 MMP16P51512 607 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 FABP5Q01469 135 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 HIST1H1AQ02539 215 aaPredicted RBP2.4□□□□□ -2.02
SCN1A-219ENST00000641575 FBXW9Q5XUX1 488 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 MORN3Q6PF18 240 aaPredicted RBP2.4□□□□□ -2.02
SCN1A-219ENST00000641575 OR10AC1Q8NH08 325 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 SVIPQ8NHG7 77 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 SPATA25Q9BR10 227 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 SMOC1Q9H4F8 434 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 TRAV12-3A0A0B4J271 114 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 EDIL3O43854 480 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 HSPB1P04792 205 aaKnown RBP2.4□□□□□ -2.02
SCN1A-219ENST00000641575 LINC00614P0C842 121 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 FCGR2BP31994 310 aaPredicted RBP2.4□□□□□ -2.02
SCN1A-219ENST00000641575 RAE1P78406 368 aaKnown RBP2.4□□□□□ -2.02
SCN1A-219ENST00000641575 FAM78AQ5JUQ0 283 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 C9orf153Q5TBE3 101 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 CA13Q8N1Q1 262 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 ARRDC1Q8N5I2 433 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 NKAPP1Q8N9T2 125 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 OR4P4Q8NGL7 312 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 SPSB2Q99619 263 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 AICDAQ9GZX7 198 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 PRDM13Q9H4Q3 707 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 SPTY2D1-AS1A0A0U1RR47 76 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 IFITM5A6NNB3 132 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 COX7A1P24310 79 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 ATP6V0CP27449 155 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM155Q4W5P6 130 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM196Q5HYL7 178 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 BOD1L2Q8IYS8 172 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 NEUROG1Q92886 237 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 C5orf30Q96GV9 206 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 SIGLEC10Q96LC7 697 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 FNDC4Q9H6D8 234 aaPredicted RBP2.4□□□□□ -2.03
SCN1A-219ENST00000641575 ZSWIM8A7E2V4 1837 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 ADARB2-AS1A8MUL3 147 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 WISP1O95388 367 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 MFAP2P55001 183 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 RPL36AP83881 106 aaKnown RBP2.4□□□□□ -2.03
SCN1A-219ENST00000641575 CD200R1LQ6Q8B3 271 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 MZB1Q8WU39 189 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 RPL36ALQ969Q0 106 aaKnown RBP2.4□□□□□ -2.03
SCN1A-219ENST00000641575 LAT2Q9GZY6 243 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 TRGV11A0A075B6L2 103 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 SYNGR1O43759 233 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 SOX8P57073 446 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 HBBP68871 147 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 TPTE2P1Q5T6R2 138 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 SUMO4Q6EEV6 95 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 BHLHA9Q7RTU4 235 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 PRNTQ86SH4 94 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 ATOH7Q8N100 152 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 OR4D5Q8NGN0 318 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 OR1L8Q8NGR8 309 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 KCPQ6ZWJ8 1503 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 CTXND1A0A1B0GTU2 59 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 IQCF6A8MYZ5 107 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 OR11H12B2RN74 326 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 CST3P01034 146 aaPredicted RBP2.4□□□□□ -2.03
SCN1A-219ENST00000641575 ERGP11308 486 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 PSG1P11464 419 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 RPL34P49207 117 aaKnown RBP2.4□□□□□ -2.03
SCN1A-219ENST00000641575 LINC00303Q3SY05 128 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 C8orf82Q6P1X6 216 aaPredicted RBP2.4□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF880Q6PDB4 577 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 RBM45Q8IUH3 476 aaKnown RBP2.4□□□□□ -2.03
SCN1A-219ENST00000641575 HDHD3Q9BSH5 251 aaPredicted RBP2.4□□□□□ -2.03
SCN1A-219ENST00000641575 GGTLC1Q9BX51 225 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 ANAPC10Q9UM13 185 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 WFDC3Q8IUB2 231 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 DMRTC2Q8IXT2 367 aaPredicted RBP2.4□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF488Q96MN9 340 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 GPR84Q9NQS5 396 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 TRAV9-1A0A075B6T8 112 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 C9orf170A2RU37 121 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 IGF2P01344 180 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 REG1AP05451 166 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms