RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	STX12	Q86Y82	276 aa		9.39	□□□□□ -0.91
CLN6-223	ENST00000637823	PIFO	Q8TCI5	191 aa		9.39	□□□□□ -0.91
CLN6-223	ENST00000637823	SSX3	Q99909	188 aa		9.39	□□□□□ -0.91
CLN6-223	ENST00000637823	PLEKHA3	Q9HB20	300 aa		9.39	□□□□□ -0.91
CLN6-223	ENST00000637823		U3KQ87	197 aa		9.39	□□□□□ -0.91
CLN6-223	ENST00000637823	CELSR1	Q9NYQ6	3014 aa		9.39	□□□□□ -0.91
CLN6-223	ENST00000637823	MYO9A	B2RTY4	2548 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823		H3BP45	60 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	FCN1	O00602	326 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	CST7	O76096	145 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	IFNA10	P01566	189 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	OPN1MW	P04001	364 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	OPN1MW2	P0DN77	364 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	OPN1MW3	P0DN78	364 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	RPL27A	P46776	148 aa	Known RBP	9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	ERH	P84090	104 aa	Known RBP	9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	TNXA	Q16473	311 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	FBLN7	Q53RD9	439 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	MRPL41	Q8IXM3	137 aa	Known RBP	9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	OR1S2	Q8NGQ3	325 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	BSCL2	Q96G97	398 aa	Predicted RBP	9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	OR4C12	Q96R67	309 aa		9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	SOX21	Q9Y651	276 aa	Predicted RBP	9.38	□□□□□ -0.91
CLN6-223	ENST00000637823	CGB1	A6NKQ9	187 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823		E7EUB6	86 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	CNIH1	O95406	144 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	METTL15P1	P0C7V9	234 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	HTR2B	P41595	481 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	RAB11A	P62491	216 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	GNB1	P62873	340 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	UBA52	P62987	128 aa	Known RBP	9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	HBG1	P69891	147 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	HBG2	P69892	147 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	IFITM2	Q01629	132 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	KRTAP1-1	Q07627	177 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	TMEM267	Q0VDI3	215 aa	Predicted RBP	9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	DEFB112	Q30KQ8	113 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	CLEC9A	Q6UXN8	241 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	STPG2	Q8N412	459 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823		Q8N9W7	124 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	OR10W1	Q8NGF6	305 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	RBM14	Q96PK6	669 aa	Known RBP	9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	RASL11B	Q9BPW5	248 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	SRSF8	Q9BRL6	282 aa	Known RBP	9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	ZNF471	Q9BX82	626 aa	Predicted RBP	9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	CYTL1	Q9NRR1	136 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	FBXL17	Q9UF56	701 aa		9.37	□□□□□ -0.91
CLN6-223	ENST00000637823	BORCS7-ASMT	A0A0B4J1R7	106 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823		A6NDX4	124 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	C15orf62	A8K5M9	175 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823		H3BUX3	64 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	JTB	O76095	146 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	CA2	P00918	260 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	OR8U8	P0C7N1	319 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	SNCA	P37840	140 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	EIF5A	P63241	154 aa	Known RBP	9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	ATP6V1F	Q16864	119 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	C10orf55	Q5SWW7	151 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	ZNF562	Q6V9R5	426 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	BCL6B	Q8N143	479 aa	Predicted RBP	9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	TMEM217	Q8N7C4	229 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	OR5C1	Q8NGR4	320 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	SLC25A33	Q9BSK2	321 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	SMIM3	Q9BZL3	60 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	WFDC1	Q9HC57	220 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	PITPNC1	Q9UKF7	332 aa		9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	PAIP2B	Q9ULR5	123 aa	Known RBP	9.36	□□□□□ -0.91
CLN6-223	ENST00000637823	AKAP9	Q99996	3911 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823		A0A1B0GW64	132 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	PMS2P5	A8MQ11	134 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	FGF16	O43320	207 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	DFFB	O76075	338 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	HLA-DRB1	P01911	266 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	OR13C7	P0DN81	318 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	NPY1R	P25929	384 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	SUB1	P53999	127 aa	Known RBP eCLIP	9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	SSBP2	P81877	361 aa	Predicted RBP	9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	ARL16	Q0P5N6	197 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	FXYD3	Q14802	87 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	BSX	Q3C1V8	233 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	C2orf83	Q53S99	150 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	OR8G2P	Q6IF36	304 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	TEX261	Q6UWH6	196 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	C16orf82	Q7Z2V1	217 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	HAPLN4	Q86UW8	402 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	UBAC2	Q8NBM4	344 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	SLC24A4	Q8NFF2	622 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	OR10P1	Q8NGE3	313 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	STOML3	Q8TAV4	291 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	SRSF12	Q8WXF0	261 aa	Known RBP	9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	ST8SIA2	Q92186	375 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	PINX1	Q96BK5	328 aa	Known RBP	9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	PRDM13	Q9H4Q3	707 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	YAE1D1	Q9NRH1	226 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	MOB4	Q9Y3A3	225 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	NAV3	Q8IVL0	2385 aa		9.35	□□□□□ -0.91
CLN6-223	ENST00000637823	IGLC7	A0M8Q6	106 aa		9.34	□□□□□ -0.91
CLN6-223	ENST00000637823	TEX22	C9J3V5	150 aa		9.34	□□□□□ -0.91
CLN6-223	ENST00000637823		M0QZK8	103 aa		9.34	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms