RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 C18orf65Q6ZTR6 163 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 REC114Q7Z4M0 266 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 OR5T1Q8NG75 326 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 LSM10Q969L4 123 aaKnown RBP14.15□□□□□ -0.14
CLN3-259ENST00000637551 TMEM56Q96MV1 263 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 TP53RKQ96S44 253 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 ATP6V0BQ99437 205 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 RANGRFQ9HD47 186 aaPredicted RBP14.15□□□□□ -0.14
CLN3-259ENST00000637551 NDUFA4L2Q9NRX3 87 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 ZNF355PQ9NSJ1 428 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 KCNIP3Q9Y2W7 256 aa14.15□□□□□ -0.14
CLN3-259ENST00000637551 IGLC7A0M8Q6 106 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 INS-IGF2F8WCM5 200 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 LINC01619G3V211 115 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 IGKV1-39P01597 117 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 IGKV1D-39P04432 117 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 TRAPPC2P0DI81 140 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 TRAPPC2BP0DI82 140 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 PI3P19957 117 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 AARDQ4LEZ3 155 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 SGPP2Q8IWX5 399 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 OR1N2Q8NGR9 330 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 RBPMSQ93062 196 aaKnown RBP14.14□□□□□ -0.15
CLN3-259ENST00000637551 THYN1Q9P016 225 aa14.14□□□□□ -0.15
CLN3-259ENST00000637551 TEX13DA0A0J9YY54 714 aaPredicted RBP14.13□□□□□ -0.15
CLN3-259ENST00000637551 A0A1B0GW64 132 aa14.13□□□□□ -0.15
CLN3-259ENST00000637551 INPP1P49441 399 aa14.13□□□□□ -0.15
CLN3-259ENST00000637551 UBE2MP61081 183 aaKnown RBP14.13□□□□□ -0.15
CLN3-259ENST00000637551 RBMS2Q15434 407 aaKnown RBP14.13□□□□□ -0.15
CLN3-259ENST00000637551 BEAN1Q3B7T3 259 aa14.13□□□□□ -0.15
CLN3-259ENST00000637551 GLYATL2Q8WU03 294 aa14.13□□□□□ -0.15
CLN3-259ENST00000637551 S100ZQ8WXG8 99 aa14.13□□□□□ -0.15
CLN3-259ENST00000637551 DPF1Q92782 380 aa14.13□□□□□ -0.15
CLN3-259ENST00000637551 CCDC32Q9BV29 185 aa14.13□□□□□ -0.15
CLN3-259ENST00000637551 PTTG2Q9NZH5 202 aa14.13□□□□□ -0.15
CLN3-259ENST00000637551 TMEM56-RWDD3S4R434 201 aa14.13□□□□□ -0.15
CLN3-259ENST00000637551 CGB1A6NKQ9 187 aa14.12□□□□□ -0.15
CLN3-259ENST00000637551 E7EUB6 86 aa14.12□□□□□ -0.15
CLN3-259ENST00000637551 ANXA3P12429 323 aa14.12□□□□□ -0.15
CLN3-259ENST00000637551 AKR1C2P52895 323 aa14.12□□□□□ -0.15
CLN3-259ENST00000637551 RHOGP84095 191 aa14.12□□□□□ -0.15
CLN3-259ENST00000637551 TMEM128Q5BJH2 165 aa14.12□□□□□ -0.15
CLN3-259ENST00000637551 ZNF114Q8NC26 417 aa14.12□□□□□ -0.15
CLN3-259ENST00000637551 OR4A16Q8NH70 328 aa14.12□□□□□ -0.15
CLN3-259ENST00000637551 RRNAD1Q96FB5 475 aaKnown RBP14.12□□□□□ -0.15
CLN3-259ENST00000637551 MS4A10Q96PG2 267 aa14.12□□□□□ -0.15
CLN3-259ENST00000637551 OR51B2Q9Y5P1 312 aa14.12□□□□□ -0.15
CLN3-259ENST00000637551 TRAV3A0A0B4J244 114 aa14.11□□□□□ -0.15
CLN3-259ENST00000637551 TEX50A0A1B0GTY4 177 aa14.11□□□□□ -0.15
CLN3-259ENST00000637551 DUXBA0A1W2PPF3 345 aa14.11□□□□□ -0.15
CLN3-259ENST00000637551 CENPXA8MT69 81 aa14.11□□□□□ -0.15
CLN3-259ENST00000637551 EGFEM1PQ0D2K5 195 aa14.11□□□□□ -0.15
CLN3-259ENST00000637551 TRIM16LQ309B1 348 aa14.11□□□□□ -0.15
CLN3-259ENST00000637551 DEFB136Q30KP8 78 aa14.11□□□□□ -0.15
CLN3-259ENST00000637551 CXorf58Q96LI9 332 aa14.11□□□□□ -0.15
CLN3-259ENST00000637551 AKIP1Q9NQ31 210 aa14.11□□□□□ -0.15
CLN3-259ENST00000637551 IGLV11-55A0A075B6I3 123 aa14.1□□□□□ -0.15
CLN3-259ENST00000637551 HMX3A6NHT5 357 aa14.1□□□□□ -0.15
CLN3-259ENST00000637551 OR5AC1P0C628 307 aa14.1□□□□□ -0.15
CLN3-259ENST00000637551 AREGP15514 252 aa14.1□□□□□ -0.15
CLN3-259ENST00000637551 HSPE1P61604 102 aaKnown RBP14.1□□□□□ -0.15
CLN3-259ENST00000637551 PRCDQ00LT1 54 aa14.1□□□□□ -0.15
CLN3-259ENST00000637551 ATP5G2Q06055 141 aa14.1□□□□□ -0.15
CLN3-259ENST00000637551 C9orf66Q5T8R8 295 aa14.1□□□□□ -0.15
CLN3-259ENST00000637551 ZNF57Q68EA5 555 aaPredicted RBP14.1□□□□□ -0.15
CLN3-259ENST00000637551 FANCD2OSQ96PS1 177 aa14.1□□□□□ -0.15
CLN3-259ENST00000637551 SDHCQ99643 169 aaPredicted RBP14.1□□□□□ -0.15
CLN3-259ENST00000637551 PEF1Q9UBV8 284 aaKnown RBP14.1□□□□□ -0.15
CLN3-259ENST00000637551 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.09□□□□□ -0.15
CLN3-259ENST00000637551 IGKV1-5P01602 117 aa14.09□□□□□ -0.15
CLN3-259ENST00000637551 DEFA4P12838 97 aa14.09□□□□□ -0.15
CLN3-259ENST00000637551 IL7P13232 177 aa14.09□□□□□ -0.15
CLN3-259ENST00000637551 BAK1Q16611 211 aa14.09□□□□□ -0.15
CLN3-259ENST00000637551 C15orf32Q32M92 178 aa14.09□□□□□ -0.15
CLN3-259ENST00000637551 OR52E5Q8NH55 327 aa14.09□□□□□ -0.15
CLN3-259ENST00000637551 TMEM230Q96A57 120 aa14.09□□□□□ -0.15
CLN3-259ENST00000637551 TRBV7-1A0A0A6YYK4 115 aa14.08□□□□□ -0.16
CLN3-259ENST00000637551 A0A0B4J2A0 478 aa14.08□□□□□ -0.16
CLN3-259ENST00000637551 G3V4G9 280 aa14.08□□□□□ -0.16
CLN3-259ENST00000637551 WT1-ASQ06250 92 aa14.08□□□□□ -0.16
CLN3-259ENST00000637551 EXOSC2Q13868 293 aaKnown RBP14.08□□□□□ -0.16
CLN3-259ENST00000637551 TMEM187Q14656 261 aa14.08□□□□□ -0.16
CLN3-259ENST00000637551 LRTM2Q8N967 370 aa14.08□□□□□ -0.16
CLN3-259ENST00000637551 OR1P1Q8NH06 330 aa14.08□□□□□ -0.16
CLN3-259ENST00000637551 VN1R17PQ8TDU5 208 aa14.08□□□□□ -0.16
CLN3-259ENST00000637551 CASTOR1Q8WTX7 329 aa14.08□□□□□ -0.16
CLN3-259ENST00000637551 SHPKQ9UHJ6 478 aa14.08□□□□□ -0.16
CLN3-259ENST00000637551 F11RQ9Y624 299 aaKnown RBP14.08□□□□□ -0.16
CLN3-259ENST00000637551 RYR3Q15413 4870 aa14.08□□□□□ -0.16
CLN3-259ENST00000637551 IGHV4OR15-8A0A075B7B6 117 aa14.07□□□□□ -0.16
CLN3-259ENST00000637551 A0A087WW49 117 aa14.07□□□□□ -0.16
CLN3-259ENST00000637551 OVOL1O14753 267 aa14.07□□□□□ -0.16
CLN3-259ENST00000637551 NDUFB6O95139 128 aa14.07□□□□□ -0.16
CLN3-259ENST00000637551 IGHV3-11P01762 117 aa14.07□□□□□ -0.16
CLN3-259ENST00000637551 APELAP0DMC3 54 aa14.07□□□□□ -0.16
CLN3-259ENST00000637551 OR13C7P0DN81 318 aa14.07□□□□□ -0.16
CLN3-259ENST00000637551 IGLL1P15814 213 aa14.07□□□□□ -0.16
CLN3-259ENST00000637551 SUPT4H1P63272 117 aaKnown RBP14.07□□□□□ -0.16
CLN3-259ENST00000637551 OXLD1Q5BKU9 147 aa14.07□□□□□ -0.16
CLN3-259ENST00000637551 PDCD10Q9BUL8 212 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms