RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 MDKP21741 143 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-214ENST00000637038 ERVFC1-1P60608 527 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 CLEC12BQ2HXU8 276 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF705AQ6ZN79 300 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-214ENST00000637038 FAM214BQ7L5A3 538 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF295-AS1Q8N0V1 137 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 KLHDC1Q8N7A1 406 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 KLF14Q8TD94 323 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-214ENST00000637038 HINT2Q9BX68 163 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 QTRT1Q9BXR0 403 aaKnown RBP3.31□□□□□ -1.88
SCN1A-214ENST00000637038 PROCRQ9UNN8 238 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 TRGV10A0A0A0MS01 117 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 A0A1B0GUS0 222 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 A4D1N5 150 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 C9JCJ5 164 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 APOA2P02652 100 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 CELA3AP09093 270 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 PAX1P15863 534 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 HOXB4P17483 251 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-214ENST00000637038 IL3RAP26951 378 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 PRDX2P32119 198 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 SUB1P53999 127 aaKnown RBP eCLIP3.31□□□□□ -1.88
SCN1A-214ENST00000637038 SLAQ13239 276 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 ESPL1Q14674 2120 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 TOMM20LQ6UXN7 152 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 Q6ZT83 130 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 LINC01551Q86U37 167 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 OR5AU1Q8NGC0 362 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 C22orf15Q8WYQ4 148 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 TRIB1Q96RU8 372 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF331Q9NQX6 463 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-214ENST00000637038 IL36BQ9NZH7 164 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 SLC25A10Q9UBX3 287 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-214ENST00000637038 POLEQ07864 2286 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 NAV2Q8IVL1 2488 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 NKX6-3A6NJ46 265 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 A8MWP6 167 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 FCN1O00602 326 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 YPEL1O60688 119 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 IL18BPO95998 194 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 CRYAAP02489 173 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 OR5G3P0C626 314 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 STAG3L2P0CL84 134 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 ARL14EPLP0DKL9 152 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 GCHFRP30047 84 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 APOBEC3AP31941 199 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-214ENST00000637038 P2RY6Q15077 328 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 C3AR1Q16581 482 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 LTC4SQ16873 150 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 PQLC2Q6ZP29 291 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 OR4B1Q8NGF8 309 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 OR1L6Q8NGR2 347 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 RND1Q92730 232 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 YPEL2Q96QA6 119 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 HES4Q9HCC6 221 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 GCM1Q9NP62 436 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 DSCAML1Q8TD84 2053 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 KNTC1P50748 2209 aa3.31□□□□□ -1.88
SCN1A-214ENST00000637038 MLNRO43193 412 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 RAMP3O60896 148 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 CRLF1O75462 422 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 LYZL6O75951 148 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 RPLP1P05386 114 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 HSPE1P61604 102 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 PSG7Q13046 419 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 C1orf194Q5T5A4 169 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 TMEM108Q6UXF1 575 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 BHLHA15Q7RTS1 189 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF418Q8TF45 676 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 BORCS7Q96B45 105 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 HES7Q9BYE0 225 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 TMEM140Q9NV12 185 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 TCF19Q9Y242 345 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 ABCA7Q8IZY2 2146 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 CACNA1EQ15878 2313 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 IGHV3-43A0A0B4J1X8 118 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 TRAV38-1A0A0B4J264 116 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 C15orf62A8K5M9 175 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 RNF223E7ERA6 249 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 CEACAM4O75871 244 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 HLA-DQA1P01909 254 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 LINC00614P0C842 121 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 P0C879 139 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 IGHV3-43DP0DP04 118 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 BRS3P32247 399 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 RPL29P47914 159 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 FABP6P51161 128 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 CCL11P51671 97 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 FOXG1P55316 489 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 RPL30P62888 115 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 ERHP84090 104 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 HLA-DRB5Q30154 266 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 DEFB113Q30KQ7 82 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 SSX7Q7RTT5 188 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 Q8NA96 180 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 MDS2Q8NDY4 140 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 NUDT10Q8NFP7 164 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 OR1L4Q8NGR5 311 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 RFESDQ8TAC1 157 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 TBX15Q96SF7 602 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms