RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 HARBI1Q96MB7 349 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 ENY2Q9NPA8 101 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 SIRT7Q9NRC8 400 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 GAR1Q9NY12 217 aaKnown RBP12.72□□□□□ -0.37
CLN3-251ENST00000636853 PRNDQ9UKY0 176 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 ITPR1Q14643 2758 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 ELOA3CA0A087WX78 387 aaPredicted RBP12.72□□□□□ -0.37
CLN3-251ENST00000636853 RAB11AP62491 216 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 DEFA6Q01524 100 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 KHDC3LQ587J8 217 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 LINC00311Q8N616 119 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 SLC24A4Q8NFF2 622 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 ZNF596Q8TC21 504 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 LHX4Q969G2 390 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 PFDN5Q99471 154 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 NABP2Q9BQ15 211 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 SPTBN1Q01082 2364 aaKnown RBP12.71□□□□□ -0.37
CLN3-251ENST00000636853 TRBV23-1A0A0A0MS06 115 aa12.71□□□□□ -0.37
CLN3-251ENST00000636853 CA2P00918 260 aa12.71□□□□□ -0.37
CLN3-251ENST00000636853 NPY1RP25929 384 aa12.71□□□□□ -0.37
CLN3-251ENST00000636853 GPX4P36969 197 aaPredicted RBP12.71□□□□□ -0.37
CLN3-251ENST00000636853 PYY3Q5JQD4 70 aa12.71□□□□□ -0.37
CLN3-251ENST00000636853 OR9G1Q8NH87 305 aa12.71□□□□□ -0.37
CLN3-251ENST00000636853 ST6GALNAC6Q969X2 333 aa12.71□□□□□ -0.37
CLN3-251ENST00000636853 TMEM186Q96B77 213 aa12.71□□□□□ -0.37
CLN3-251ENST00000636853 HRNRQ86YZ3 2850 aaPredicted RBP12.71□□□□□ -0.38
CLN3-251ENST00000636853 A0A087X0M5 115 aa12.71□□□□□ -0.38
CLN3-251ENST00000636853 A0A1B0GX30 115 aa12.71□□□□□ -0.38
CLN3-251ENST00000636853 C17orf112F2Z3M2 114 aa12.71□□□□□ -0.38
CLN3-251ENST00000636853 TGOLN2O43493 480 aa12.71□□□□□ -0.38
CLN3-251ENST00000636853 KBTBD11O94819 623 aa12.71□□□□□ -0.38
CLN3-251ENST00000636853 SOD3P08294 240 aa12.71□□□□□ -0.38
CLN3-251ENST00000636853 BCL2P10415 239 aa12.71□□□□□ -0.38
CLN3-251ENST00000636853 TREML4Q6UXN2 200 aa12.71□□□□□ -0.38
CLN3-251ENST00000636853 OSR1Q8TAX0 266 aaPredicted RBP12.71□□□□□ -0.38
CLN3-251ENST00000636853 TMEM133Q9H2Q1 129 aa12.71□□□□□ -0.38
CLN3-251ENST00000636853 BET1LQ9NYM9 111 aa12.71□□□□□ -0.38
CLN3-251ENST00000636853 TEX50A0A1B0GTY4 177 aa12.7□□□□□ -0.38
CLN3-251ENST00000636853 IFITM10A6NMD0 228 aa12.7□□□□□ -0.38
CLN3-251ENST00000636853 MBP02144 154 aa12.7□□□□□ -0.38
CLN3-251ENST00000636853 HIST1H1BP16401 226 aaKnown RBP12.7□□□□□ -0.38
CLN3-251ENST00000636853 GCSAMLQ5JQS6 135 aa12.7□□□□□ -0.38
CLN3-251ENST00000636853 C8orf31Q8N9H6 132 aa12.7□□□□□ -0.38
CLN3-251ENST00000636853 FLYWCH2Q96CP2 140 aaKnown RBP12.7□□□□□ -0.38
CLN3-251ENST00000636853 RAB1BQ9H0U4 201 aa12.7□□□□□ -0.38
CLN3-251ENST00000636853 PLEKHA3Q9HB20 300 aa12.7□□□□□ -0.38
CLN3-251ENST00000636853 CBLN4Q9NTU7 201 aa12.7□□□□□ -0.38
CLN3-251ENST00000636853 PIEZO1Q92508 2521 aa12.7□□□□□ -0.38
CLN3-251ENST00000636853 CTXND1A0A1B0GTU2 59 aa12.69□□□□□ -0.38
CLN3-251ENST00000636853 UQCRFS1P47985 274 aa12.69□□□□□ -0.38
CLN3-251ENST00000636853 PRCDQ00LT1 54 aa12.69□□□□□ -0.38
CLN3-251ENST00000636853 ZNF257Q9Y2Q1 563 aa12.69□□□□□ -0.38
CLN3-251ENST00000636853 H3BQ15 152 aa12.69□□□□□ -0.38
CLN3-251ENST00000636853 RPS10P46783 165 aaKnown RBP12.69□□□□□ -0.38
CLN3-251ENST00000636853 DLK1P80370 383 aa12.69□□□□□ -0.38
CLN3-251ENST00000636853 TMEM177Q53S58 311 aa12.69□□□□□ -0.38
CLN3-251ENST00000636853 ARSJQ5FYB0 599 aaPredicted RBP12.69□□□□□ -0.38
CLN3-251ENST00000636853 TGIF2LXQ8IUE1 241 aa12.69□□□□□ -0.38
CLN3-251ENST00000636853 RAB24Q969Q5 203 aa12.69□□□□□ -0.38
CLN3-251ENST00000636853 MGST2Q99735 147 aa12.69□□□□□ -0.38
CLN3-251ENST00000636853 ACTR3CQ9C0K3 210 aaPredicted RBP12.69□□□□□ -0.38
CLN3-251ENST00000636853 DOK5Q9P104 306 aa12.69□□□□□ -0.38
CLN3-251ENST00000636853 NDUFS6O75380 124 aaKnown RBP12.68□□□□□ -0.38
CLN3-251ENST00000636853 C11orf71Q6IPW1 123 aa12.68□□□□□ -0.38
CLN3-251ENST00000636853 FAM71F2Q6NXP2 309 aa12.68□□□□□ -0.38
CLN3-251ENST00000636853 OR10W1Q8NGF6 305 aa12.68□□□□□ -0.38
CLN3-251ENST00000636853 OR4C13Q8NGP0 309 aa12.68□□□□□ -0.38
CLN3-251ENST00000636853 C1orf159Q96HA4 380 aa12.68□□□□□ -0.38
CLN3-251ENST00000636853 IGHV3-72A0A0B4J1Y9 119 aa12.68□□□□□ -0.38
CLN3-251ENST00000636853 ZNF137PP52743 207 aa12.68□□□□□ -0.38
CLN3-251ENST00000636853 ACOT6Q3I5F7 207 aaPredicted RBP12.68□□□□□ -0.38
CLN3-251ENST00000636853 PDPNQ86YL7 162 aa12.68□□□□□ -0.38
CLN3-251ENST00000636853 IGHV2-26A0A0B4J1V2 119 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 PPIAL4CA0A0B4J2A2 164 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 A0A1W2PPR1 153 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 YIF1AO95070 293 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 FSTL3O95633 263 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 PPIAL4GP0DN37 164 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 RITA1Q96K30 269 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 GGTLC1Q9BX51 225 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 PRDM13Q9H4Q3 707 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 FKBP11Q9NYL4 201 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 VAX2Q9UIW0 290 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 WASHC3Q9Y3C0 194 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 B4DEV8 164 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 CYB5BO43169 146 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 MPDU1O75352 247 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 GNLYP22749 145 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 ELOBQ15370 118 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 LBHQ53QV2 105 aaPredicted RBP12.67□□□□□ -0.38
CLN3-251ENST00000636853 MIC13Q5XKP0 118 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 WDR25Q64LD2 544 aaPredicted RBP12.67□□□□□ -0.38
CLN3-251ENST00000636853 OR8B3Q8NGG8 313 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 GATAD1Q8WUU5 269 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 FAM122AQ96E09 287 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 OR8B2Q96RD0 313 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 PATZ1Q9HBE1 687 aaKnown RBP12.67□□□□□ -0.38
CLN3-251ENST00000636853 NPVFQ9HCQ7 196 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 ARHGAP32A7KAX9 2087 aa12.67□□□□□ -0.38
CLN3-251ENST00000636853 E7EUB6 86 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms