RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ALKAL2Q6UX46 152 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 TMEM14EPQ6UXP3 125 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 PIFOQ8TCI5 191 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 PCNPQ8WW12 178 aaKnown RBP16.04■□□□□ 0.16
CLN3-250ENST00000636839 ST8SIA2Q92186 375 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 RNF5Q99942 180 aa16.04■□□□□ 0.16
CLN3-250ENST00000636839 NCBP2LA6PVI3 153 aaKnown RBP16.03■□□□□ 0.16
CLN3-250ENST00000636839 ATP6V1G1O75348 118 aa16.03■□□□□ 0.16
CLN3-250ENST00000636839 FGF2P09038 288 aa16.03■□□□□ 0.16
CLN3-250ENST00000636839 TMEM11P17152 192 aa16.03■□□□□ 0.16
CLN3-250ENST00000636839 SULT1A1P50225 295 aa16.03■□□□□ 0.16
CLN3-250ENST00000636839 PLGLAQ15195 96 aa16.03■□□□□ 0.16
CLN3-250ENST00000636839 TNXAQ16473 311 aa16.03■□□□□ 0.16
CLN3-250ENST00000636839 TLN2Q9Y4G6 2542 aa16.03■□□□□ 0.16
CLN3-250ENST00000636839 J3QLI3 93 aa16.02■□□□□ 0.16
CLN3-250ENST00000636839 RGS13O14921 159 aa16.02■□□□□ 0.16
CLN3-250ENST00000636839 NPBQ8NG41 125 aa16.02■□□□□ 0.16
CLN3-250ENST00000636839 OR5B3Q8NH48 314 aa16.02■□□□□ 0.16
CLN3-250ENST00000636839 FKBP11Q9NYL4 201 aa16.02■□□□□ 0.16
CLN3-250ENST00000636839 STRAPQ9Y3F4 350 aaKnown RBP16.02■□□□□ 0.16
CLN3-250ENST00000636839 RFNGQ9Y644 331 aa16.02■□□□□ 0.16
CLN3-250ENST00000636839 ACANP16112 2415 aa16.02■□□□□ 0.15
CLN3-250ENST00000636839 PMS2P5A8MQ11 134 aa16.02■□□□□ 0.15
CLN3-250ENST00000636839 IFNA10P01566 189 aa16.02■□□□□ 0.15
CLN3-250ENST00000636839 FAM106CPP0CH98 169 aa16.02■□□□□ 0.15
CLN3-250ENST00000636839 STX12Q86Y82 276 aa16.02■□□□□ 0.15
CLN3-250ENST00000636839 OR1L8Q8NGR8 309 aa16.02■□□□□ 0.15
CLN3-250ENST00000636839 CIB3Q96Q77 187 aaPredicted RBP16.02■□□□□ 0.15
CLN3-250ENST00000636839 HIPK2Q9H2X6 1198 aa16.02■□□□□ 0.15
CLN3-250ENST00000636839 PLEKHA3Q9HB20 300 aa16.02■□□□□ 0.15
CLN3-250ENST00000636839 FAM96BQ9Y3D0 163 aa16.02■□□□□ 0.15
CLN3-250ENST00000636839 NDUFA3O95167 84 aa16.01■□□□□ 0.15
CLN3-250ENST00000636839 BRS3P32247 399 aa16.01■□□□□ 0.15
CLN3-250ENST00000636839 WT1-ASQ06250 92 aa16.01■□□□□ 0.15
CLN3-250ENST00000636839 TMEM219Q86XT9 240 aa16.01■□□□□ 0.15
CLN3-250ENST00000636839 MYO9AB2RTY4 2548 aa16.01■□□□□ 0.15
CLN3-250ENST00000636839 CA2P00918 260 aa16.01■□□□□ 0.15
CLN3-250ENST00000636839 REG1AP05451 166 aa16.01■□□□□ 0.15
CLN3-250ENST00000636839 C19orf35Q6ZS72 473 aa16.01■□□□□ 0.15
CLN3-250ENST00000636839 MMD2Q8IY49 270 aa16.01■□□□□ 0.15
CLN3-250ENST00000636839 BAXQ07812 192 aa16■□□□□ 0.15
CLN3-250ENST00000636839 C5orf64Q2M2E5 130 aa16■□□□□ 0.15
CLN3-250ENST00000636839 FAM74A1Q5RGS3 127 aa16■□□□□ 0.15
CLN3-250ENST00000636839 SSX3Q99909 188 aa16■□□□□ 0.15
CLN3-250ENST00000636839 MEGF9Q9H1U4 602 aa16■□□□□ 0.15
CLN3-250ENST00000636839 ENY2Q9NPA8 101 aa16■□□□□ 0.15
CLN3-250ENST00000636839 SH2D7A6NKC9 451 aaPredicted RBP15.99■□□□□ 0.15
CLN3-250ENST00000636839 TAAR5O14804 337 aa15.99■□□□□ 0.15
CLN3-250ENST00000636839 COMPP49747 757 aaPredicted RBP15.99■□□□□ 0.15
CLN3-250ENST00000636839 KIAA1456Q9P272 454 aa15.99■□□□□ 0.15
CLN3-250ENST00000636839 NAV3Q8IVL0 2385 aa15.99■□□□□ 0.15
CLN3-250ENST00000636839 MXRA5Q9NR99 2828 aa15.99■□□□□ 0.15
CLN3-250ENST00000636839 ACTL6BO94805 426 aa15.99■□□□□ 0.15
CLN3-250ENST00000636839 OR1S2Q8NGQ3 325 aa15.99■□□□□ 0.15
CLN3-250ENST00000636839 FAM103A1Q9BTL3 118 aaKnown RBP15.99■□□□□ 0.15
CLN3-250ENST00000636839 AREGP15514 252 aa15.98■□□□□ 0.15
CLN3-250ENST00000636839 UBA52P62987 128 aaKnown RBP15.98■□□□□ 0.15
CLN3-250ENST00000636839 IL17RELQ6ZVW7 336 aa15.98■□□□□ 0.15
CLN3-250ENST00000636839 BAP18Q8IXM2 172 aa15.98■□□□□ 0.15
CLN3-250ENST00000636839 Q8N9W7 124 aa15.98■□□□□ 0.15
CLN3-250ENST00000636839 SLC24A4Q8NFF2 622 aa15.98■□□□□ 0.15
CLN3-250ENST00000636839 STOML3Q8TAV4 291 aa15.98■□□□□ 0.15
CLN3-250ENST00000636839 OR13C7P0DN81 318 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 RPL27AP46776 148 aaKnown RBP15.97■□□□□ 0.15
CLN3-250ENST00000636839 KRTAP1-1Q07627 177 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 SLC38A11Q08AI6 406 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 LY6EQ16553 131 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 DEFB112Q30KQ8 113 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 HSD17B11Q8NBQ5 300 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 PLA2G2EQ9NZK7 142 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 IGLC7A0M8Q6 106 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 TEX22C9J3V5 150 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 FBXO24O75426 580 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 FSHBP01225 129 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 TMED6Q8WW62 240 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 SRSF12Q8WXF0 261 aaKnown RBP15.97■□□□□ 0.15
CLN3-250ENST00000636839 SH3BGRL3Q9H299 93 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 CACFD1Q9UGQ2 172 aa15.97■□□□□ 0.15
CLN3-250ENST00000636839 H3BUX3 64 aa15.96■□□□□ 0.15
CLN3-250ENST00000636839 JTBO76095 146 aa15.96■□□□□ 0.15
CLN3-250ENST00000636839 CNIH1O95406 144 aa15.96■□□□□ 0.15
CLN3-250ENST00000636839 FBP1P09467 338 aa15.96■□□□□ 0.15
CLN3-250ENST00000636839 TPT1P13693 172 aaKnown RBP15.96■□□□□ 0.15
CLN3-250ENST00000636839 NPY1RP25929 384 aa15.96■□□□□ 0.15
CLN3-250ENST00000636839 NDPQ00604 133 aa15.96■□□□□ 0.15
CLN3-250ENST00000636839 TUSC1Q2TAM9 212 aa15.96■□□□□ 0.15
CLN3-250ENST00000636839 ETV3LQ6ZN32 361 aa15.96■□□□□ 0.15
CLN3-250ENST00000636839 NANPQ8TBE9 248 aa15.96■□□□□ 0.15
CLN3-250ENST00000636839 ATP5SQ99766 215 aa15.96■□□□□ 0.15
CLN3-250ENST00000636839 IFNA7P01567 189 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 IFNA4P05014 189 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 OR8U8P0C7N1 319 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 RNASE2P10153 161 aaKnown RBP15.95■□□□□ 0.14
CLN3-250ENST00000636839 RUNX1Q01196 453 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 FXYD3Q14802 87 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 MLANAQ16655 118 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 LILRB2Q8N423 598 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 UBAC2Q8NBM4 344 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 OR10P1Q8NGE3 313 aa15.95■□□□□ 0.14
CLN3-250ENST00000636839 OTOGQ6ZRI0 2925 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms