RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-223	ENST00000629179	OR9G4	Q8NGQ1	327 aa		10.85	□□□□□ -0.67
PNKP-223	ENST00000629179	OR6Q1	Q8NGQ2	317 aa		10.85	□□□□□ -0.67
PNKP-223	ENST00000629179	ZNF486	Q96H40	463 aa	Predicted RBP	10.85	□□□□□ -0.67
PNKP-223	ENST00000629179	SEC22A	Q96IW7	307 aa		10.85	□□□□□ -0.67
PNKP-223	ENST00000629179	HINT2	Q9BX68	163 aa		10.85	□□□□□ -0.67
PNKP-223	ENST00000629179	NXF2	Q9GZY0	626 aa	Known RBP	10.85	□□□□□ -0.67
PNKP-223	ENST00000629179	KLK9	Q9UKQ9	250 aa		10.85	□□□□□ -0.67
PNKP-223	ENST00000629179	OR51B2	Q9Y5P1	312 aa		10.85	□□□□□ -0.67
PNKP-223	ENST00000629179	DBX1	A6NMT0	343 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	HLA-A	P01891	365 aa	Known RBP	10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	OR13C7	P0DN81	318 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	HIST1H1B	P16401	226 aa	Known RBP	10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	PTBP1	P26599	531 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	WT1-AS	Q06250	92 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	TATDN3	Q17R31	274 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	CLEC19A	Q6UXS0	136 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	OR13C8	Q8NGS7	320 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	ZFAND1	Q8TCF1	268 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	MARCH1	Q8TCQ1	289 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	MRGPRF	Q96AM1	343 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	CCDC140	Q96MF4	163 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	SOST	Q9BQB4	213 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	SRSF8	Q9BRL6	282 aa	Known RBP	10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	NDUFA4L2	Q9NRX3	87 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	RABL2A	Q9UBK7	228 aa	Predicted RBP	10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	RABL2B	Q9UNT1	228 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	DMRT1	Q9Y5R6	373 aa		10.84	□□□□□ -0.67
PNKP-223	ENST00000629179	GSTZ1	O43708	216 aa	Predicted RBP	10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	IGLV1-51	P01701	117 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	SERPINE2	P07093	398 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	CSN3	P07498	182 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	GP9	P14770	177 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	CD69	Q07108	199 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	DCTN2	Q13561	401 aa	Known RBP	10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	MEF2D	Q14814	521 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	H2BFWT	Q7Z2G1	175 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	OR4C16	Q8NGL9	310 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	EEF1AKMT3	Q96AZ1	226 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	TP53RK	Q96S44	253 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	B9D2	Q9BPU9	175 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	COPZ2	Q9P299	210 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	PRND	Q9UKY0	176 aa		10.83	□□□□□ -0.68
PNKP-223	ENST00000629179	C3orf85	A0A1B0GTC6	90 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	FABP12	A6NFH5	140 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	MFSD2B	A6NFX1	497 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	C15orf61	A6NNL5	157 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	DISC1	C4P0D8	188 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179		H0Y980	276 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	OR2C1	O95371	312 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	AKAIN1	P0CW23	69 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	IZUMO4	Q1ZYL8	232 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	SP6	Q3SY56	376 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	FAM209B	Q5JX69	171 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	THOC7	Q6I9Y2	204 aa	Known RBP	10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	SLC25A24	Q6NUK1	477 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	GDPD1	Q8N9F7	314 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	LSM10	Q969L4	123 aa	Known RBP	10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	TSC22D3	Q99576	134 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	RBM38	Q9H0Z9	239 aa	Known RBP	10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	TMEM14B	Q9NUH8	114 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	FKBP11	Q9NYL4	201 aa		10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	RSL24D1	Q9UHA3	163 aa	Known RBP	10.82	□□□□□ -0.68
PNKP-223	ENST00000629179	ANKRD20A5P	A0PJZ0	165 aa		10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	GGCT	O75223	188 aa	Known RBP	10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	IGKV1-5	P01602	117 aa		10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	CTSD	P07339	412 aa	Predicted RBP	10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	ARL3	P36405	182 aa		10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	MECP2	P51608	486 aa	Known RBP	10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	MFAP2	P55001	183 aa		10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	CCDC71L	Q8N9Z2	235 aa		10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	OR5B3	Q8NH48	314 aa		10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	OR4A16	Q8NH70	328 aa		10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	RTBDN	Q9BSG5	229 aa	Predicted RBP	10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	PEMT	Q9UBM1	199 aa		10.81	□□□□□ -0.68
PNKP-223	ENST00000629179	TRBV7-1	A0A0A6YYK4	115 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	CLEC3B	P05452	202 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	C11orf87	Q6NUJ2	197 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	ADAMTSL5	Q6ZMM2	481 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	OR51S1	Q8NGJ8	323 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	ZNF502	Q8TBZ5	544 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	CXorf58	Q96LI9	332 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	TMEM56	Q96MV1	263 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	ZC4H2	Q9NQZ6	224 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	BATF3	Q9NR55	127 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	THYN1	Q9P016	225 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	C14orf166	Q9Y224	244 aa	Known RBP	10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	F11R	Q9Y624	299 aa	Known RBP	10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	SMAD5-AS1	Q9Y6J3	95 aa		10.8	□□□□□ -0.68
PNKP-223	ENST00000629179	IGHV3-21	A0A0B4J1V1	117 aa		10.79	□□□□□ -0.68
PNKP-223	ENST00000629179	EDN2	P20800	178 aa		10.79	□□□□□ -0.68
PNKP-223	ENST00000629179	TRIM16L	Q309B1	348 aa		10.79	□□□□□ -0.68
PNKP-223	ENST00000629179	GPHB5	Q86YW7	130 aa		10.79	□□□□□ -0.68
PNKP-223	ENST00000629179	ASCL2	Q99929	193 aa		10.79	□□□□□ -0.68
PNKP-223	ENST00000629179	THAP7	Q9BT49	309 aa	Predicted RBP	10.79	□□□□□ -0.68
PNKP-223	ENST00000629179	C5orf66	Q9H5L9	145 aa		10.79	□□□□□ -0.68
PNKP-223	ENST00000629179	SIGLEC8	Q9NYZ4	499 aa		10.79	□□□□□ -0.68
PNKP-223	ENST00000629179	GPR132	Q9UNW8	380 aa		10.79	□□□□□ -0.68
PNKP-223	ENST00000629179	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	10.78	□□□□□ -0.68
PNKP-223	ENST00000629179	IZUMO1R	A6ND01	250 aa		10.78	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms