RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 EP300Q09472 2414 aaPredicted RBP7.57□□□□□ -1.2
VCL-206ENST00000623461 PTPRDP23468 1912 aa7.57□□□□□ -1.2
VCL-206ENST00000623461 TRAV8-6A0A0B4J262 113 aa7.57□□□□□ -1.2
VCL-206ENST00000623461 RRHO14718 337 aa7.57□□□□□ -1.2
VCL-206ENST00000623461 SNAI2O43623 268 aa7.57□□□□□ -1.2
VCL-206ENST00000623461 HES3Q5TGS1 186 aa7.57□□□□□ -1.2
VCL-206ENST00000623461 GUSBP11Q6P575 273 aa7.57□□□□□ -1.2
VCL-206ENST00000623461 PLA2G2FQ9BZM2 168 aa7.57□□□□□ -1.2
VCL-206ENST00000623461 LINC01559Q495D7 138 aa7.57□□□□□ -1.2
VCL-206ENST00000623461 HILPDAQ9Y5L2 63 aa7.57□□□□□ -1.2
VCL-206ENST00000623461 CKAP5Q14008 2032 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 LYPD3O95274 346 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 UNQ5815/PRO19632Q6UWF5 114 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 GREB1Q4ZG55 1949 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 ARID1AO14497 2285 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 COX7A1P24310 79 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 ERVK11-1P61568 191 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 SRSF7Q16629 238 aaKnown RBP eCLIP7.56□□□□□ -1.2
VCL-206ENST00000623461 CCL17Q92583 94 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 PLA2G3Q9NZ20 509 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 HIGD1CA8MV81 97 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 APOMO95445 188 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 MYF5P13349 255 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 SYT8Q8NBV8 401 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 TMEM50AO95807 157 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 GPR6P46095 362 aaPredicted RBP7.56□□□□□ -1.2
VCL-206ENST00000623461 OCC1Q8TAD7 63 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 IDI2-AS1Q9NZ38 188 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 MYLKQ15746 1914 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 PROB1E7EW31 1015 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 LDLRAD4O15165 306 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 CD5LO43866 347 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 CCL1P22362 96 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 TIMP3P35625 211 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 PAX2Q02962 417 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 TPTE2P1Q5T6R2 138 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 FAM53AQ6NSI3 398 aaPredicted RBP7.56□□□□□ -1.2
VCL-206ENST00000623461 ORMDL3Q8N138 153 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 LOXL4Q96JB6 756 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 ARRDC1-AS1Q9H2J1 176 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 LY96Q9Y6Y9 160 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 FAM181BA6NEQ2 426 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 J3QW42 95 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 PPP1R17O96001 155 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 GAGE13Q4V321 117 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 PAPPA-AS1Q5QFB9 102 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 TMEM190Q8WZ59 177 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 RAXQ9Y2V3 346 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 SPTA1P02549 2419 aa7.56□□□□□ -1.2
VCL-206ENST00000623461 SCN10AQ9Y5Y9 1956 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 LTBP1Q14766 1721 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 CDX4O14627 284 aaPredicted RBP7.55□□□□□ -1.2
VCL-206ENST00000623461 ZFAND6Q6FIF0 208 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 PAQR4Q8N4S7 273 aaPredicted RBP7.55□□□□□ -1.2
VCL-206ENST00000623461 OR10W1Q8NGF6 305 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 SNHG12Q9BXW3 62 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 MS4A5Q9H3V2 200 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 MRPL27Q9P0M9 148 aaKnown RBP7.55□□□□□ -1.2
VCL-206ENST00000623461 PLAUP00749 431 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 TYMSP04818 313 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 TSPOP30536 169 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 UCP2P55851 309 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 MST1LQ2TV78 715 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 LINC00305Q7Z4B0 112 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 OR4A5Q8NH83 315 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 IGHV1OR15-9A0A0B4J2B8 117 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 SPINK2P20155 84 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 GOLT1AQ6ZVE7 132 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 GREM1O60565 184 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 CTSSP25774 331 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 TMEM92Q6UXU6 159 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.55□□□□□ -1.2
VCL-206ENST00000623461 OR5P3Q8WZ94 311 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 CALYQ9NYX4 217 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 TRAV8-2A0A0B4J237 113 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 SPINT1O43278 529 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 ID1P41134 155 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 CX3CL1P78423 397 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 MBNL2Q5VZF2 373 aaKnown RBP7.55□□□□□ -1.2
VCL-206ENST00000623461 IFI27L2Q9H2X8 130 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 A0A0G2JMZ2 1700 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 TRBV20OR9-2A0A075B6H5 130 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 A0A0G2JLM5 398 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 A0A1W2PRE2 83 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 C9JCJ5 164 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 NBEAP1P0C6P0 100 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 KLRB1Q12918 225 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 CACNG8Q8WXS5 425 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 MESP1Q9BRJ9 268 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 NHP2Q9NX24 153 aaKnown RBP7.55□□□□□ -1.2
VCL-206ENST00000623461 POLEQ07864 2286 aa7.55□□□□□ -1.2
VCL-206ENST00000623461 IGHV3OR15-7A0A075B7D8 119 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 GAGE12BA1L429 117 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 NPIPB6E9PJ23 425 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 GPX1P07203 203 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 SUPT4H1P63272 117 aaKnown RBP7.54□□□□□ -1.2
VCL-206ENST00000623461 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.54□□□□□ -1.2
VCL-206ENST00000623461 GPR82Q96P67 336 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 FOXC2Q99958 501 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 HOXA3O43365 443 aaPredicted RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms