RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 RBPJQ06330 500 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 LINC00173Q6ZV60 143 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 MRPL52Q86TS9 123 aaKnown RBP4.26□□□□□ -1.73
VPS13D-214ENST00000620676 LRRC29Q8WV35 223 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 TMEM190Q8WZ59 177 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 NPVFQ9HCQ7 196 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 SPG11Q96JI7 2443 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 MDC1Q14676 2089 aaKnown RBP4.26□□□□□ -1.73
VPS13D-214ENST00000620676 K7ESF4 209 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 TFF2Q03403 129 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 VWC2Q2TAL6 325 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 FAM90A2PQ658T7 463 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 ZNF407Q9C0G0 2248 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 LAMB2P55268 1798 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 COL4A1P02462 1669 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 A0A1B0GX78 115 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 IGHV3-23P01764 117 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 CCR5P51681 352 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 LINC00205P59089 165 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 BADQ92934 168 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 TNRC6CQ9HCJ0 1690 aaKnown RBP4.26□□□□□ -1.73
VPS13D-214ENST00000620676 A0A1W2PQF6 199 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 MS4A18H0YCH9 400 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 MS4A18Q3C1V0 323 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 FBXW9Q5XUX1 488 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 PRELID3AQ96N28 172 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 SLC25A10Q9UBX3 287 aaPredicted RBP4.26□□□□□ -1.73
VPS13D-214ENST00000620676 TRBV9A0A0B4J1U6 114 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 SYS1-DBNDD2H3BUS1 97 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 LIPFP07098 398 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 CX3CL1P78423 397 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 OR5P3Q8WZ94 311 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 SNRNP40Q96DI7 357 aaKnown RBP4.26□□□□□ -1.73
VPS13D-214ENST00000620676 PIMREGQ9BSJ6 248 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 C9orf118A6NHY6 69 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 IFI27P40305 119 aaPredicted RBP4.26□□□□□ -1.73
VPS13D-214ENST00000620676 RBX1P62877 108 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 ATP5G2Q06055 141 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 BVES-AS1Q5T3Y7 98 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 LINC01551Q86U37 167 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 RABAC1Q9UI14 185 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 SVILO95425 2214 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 MED12Q93074 2177 aa4.26□□□□□ -1.73
VPS13D-214ENST00000620676 NKX2-8O15522 239 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 HERV-K104P63124 156 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 CD300EQ496F6 205 aaPredicted RBP4.25□□□□□ -1.73
VPS13D-214ENST00000620676 WIPI1Q5MNZ9 446 aaPredicted RBP4.25□□□□□ -1.73
VPS13D-214ENST00000620676 Q96M66 194 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 FOXB1Q99853 325 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 FGF21Q9NSA1 209 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 ZNF319Q9P2F9 582 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 RBBP6Q7Z6E9 1792 aaKnown RBP4.25□□□□□ -1.73
VPS13D-214ENST00000620676 IGHV3-35A0A0C4DH35 117 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 KCNE4Q8WWG9 221 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 VKORC1Q9BQB6 163 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 POLDIP2Q9Y2S7 368 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 ABCA7Q8IZY2 2146 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 FRMD6-AS1P0C7T7 363 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 PCSK4Q6UW60 755 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 TEX45Q8NA69 505 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 ELSPBP1Q96BH3 223 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 C1QTNF5Q9BXJ0 243 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 IL23AQ9NPF7 189 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 SPAARA0A1B0GVQ0 90 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 CEACAM18A8MTB9 384 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 VENTXO95231 258 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 KHDC1LQ5JSQ8 128 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 MEIG1Q5JSS6 88 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 INO80CQ6PI98 192 aaPredicted RBP4.25□□□□□ -1.73
VPS13D-214ENST00000620676 GLMPQ8WWB7 406 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 GNG3P63215 75 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 HIGD1AQ9Y241 93 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 FOCADQ5VW36 1801 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 KIAA1551Q9HCM1 1747 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 MOSP00540 346 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 ETDBQ3ZM63 59 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 TEX43Q6ZNM6 134 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 FAM89BQ8N5H3 189 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 SCGB3A1Q96QR1 104 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 IGKV3D-15A0A087WSY6 115 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 IGKV3-15P01624 115 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 CAPZBP47756 277 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 SRSF7Q16629 238 aaKnown RBP eCLIP4.25□□□□□ -1.73
VPS13D-214ENST00000620676 VOPP1Q96AW1 172 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 PYYP10082 97 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 PAQR4Q8N4S7 273 aaPredicted RBP4.25□□□□□ -1.73
VPS13D-214ENST00000620676 IGKV3D-11A0A0A0MRZ8 115 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 IGKV3-11P04433 115 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 RCHY1Q96PM5 261 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 RPP21Q9H633 154 aaKnown RBP4.25□□□□□ -1.73
VPS13D-214ENST00000620676 TMEM14DPA8MWL7 114 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 K7EP34 96 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 LYZL6O75951 148 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 TNFRSF19Q9NS68 423 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 A0A1B0GW64 132 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 H3BMG7 143 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 IGLL1P15814 213 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 SEC11AP67812 179 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 MRAPQ8TCY5 172 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 DYNLRB1Q9NP97 96 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms