RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 VSIRQ9H7M9 311 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 RPRMQ9NS64 109 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 MLXQ9UH92 298 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 FAM74A7A6NL05 159 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 PSMB3P49720 205 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 DVL1P1P54792 670 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-213ENST00000620219 CCL20P78556 96 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 FAM74A3Q4VXF1 159 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 VMO1Q7Z5L0 202 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 GINS3Q9BRX5 216 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 HSPB7Q9UBY9 170 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 URGCP-MRPS24S4R325 110 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 TMEM11P17152 192 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 AKR1D1P51857 326 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 HLA-DRB5Q30154 266 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 MMD2Q8IY49 270 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 LFNGQ8NES3 379 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 C7orf69Q9H7B7 122 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 NAV3Q8IVL0 2385 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 FGF16O43320 207 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 B2MP61769 119 aa12.82□□□□□ -0.36
CPSF1-213ENST00000620219 PDPNQ86YL7 162 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 RBFOX2O43251 390 aaKnown RBP eCLIP12.81□□□□□ -0.361e-7■■■■□ 24.7
CPSF1-213ENST00000620219 IGHV2-70P01814 119 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 CDC34P49427 236 aaPredicted RBP12.81□□□□□ -0.36
CPSF1-213ENST00000620219 TEPPQ6URK8 271 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 BRD3OSQ6XYD6 125 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 UNKLQ9H9P5 680 aaKnown RBP12.81□□□□□ -0.36
CPSF1-213ENST00000620219 C15orf61A6NNL5 157 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 H0YJW9 148 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 UPK2O00526 184 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 FAM78BQ5VT40 261 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 CLDND2Q8NHS1 167 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 FAM216AQ8WUB2 273 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 RASL11BQ9BPW5 248 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 NABP2Q9BQ15 211 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 PLA2G2EQ9NZK7 142 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 IGSF10Q6WRI0 2623 aa12.81□□□□□ -0.36
CPSF1-213ENST00000620219 TRIM77I1YAP6 450 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 HNF1AP20823 631 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 NPBWR1P48145 328 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 CORO2AQ92828 525 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 TMEM204Q9BSN7 226 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 KCNIP2Q9NS61 270 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 COA4Q9NYJ1 87 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 TGFAP01135 160 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 MBP02144 154 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 GATA2P23769 480 aaPredicted RBP12.8□□□□□ -0.36
CPSF1-213ENST00000620219 OR10J1P30954 320 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 LGALS7P47929 136 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 UQCC3Q6UW78 93 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 NPVFQ9HCQ7 196 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 SPENQ96T58 3664 aaKnown RBP12.8□□□□□ -0.36
CPSF1-213ENST00000620219 PROP1O75360 226 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 ZNF430Q9H8G1 570 aaPredicted RBP12.8□□□□□ -0.36
CPSF1-213ENST00000620219 MED9Q9NWA0 146 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 SMAD7O15105 426 aaKnown RBP12.8□□□□□ -0.36
CPSF1-213ENST00000620219 COX7A2P2O60397 106 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 SCAF4O95104 1147 aaKnown RBP12.8□□□□□ -0.36
CPSF1-213ENST00000620219 RELBQ01201 579 aa12.8□□□□□ -0.36
CPSF1-213ENST00000620219 SEBOXQ9HB31 216 aaPredicted RBP12.8□□□□□ -0.36
CPSF1-213ENST00000620219 BARX1Q9HBU1 254 aaPredicted RBP12.8□□□□□ -0.36
CPSF1-213ENST00000620219 IGHV1-3A0A0C4DH29 117 aa12.79□□□□□ -0.36
CPSF1-213ENST00000620219 CNTFRP26992 372 aa12.79□□□□□ -0.36
CPSF1-213ENST00000620219 ISOC2Q96AB3 205 aa12.79□□□□□ -0.36
CPSF1-213ENST00000620219 WDR61Q9GZS3 305 aaKnown RBP12.79□□□□□ -0.36
CPSF1-213ENST00000620219 KAAG1Q9UBP8 84 aa12.79□□□□□ -0.36
CPSF1-213ENST00000620219 BUB1B-PAK6H3BSN5 160 aa12.79□□□□□ -0.36
CPSF1-213ENST00000620219 TCF23Q7RTU1 214 aa12.79□□□□□ -0.36
CPSF1-213ENST00000620219 TRAV40A0A0B4J280 105 aa12.79□□□□□ -0.36
CPSF1-213ENST00000620219 RBFOX3A6NFN3 312 aa12.79□□□□□ -0.36
CPSF1-213ENST00000620219 PXMP4Q9Y6I8 212 aa12.79□□□□□ -0.36
CPSF1-213ENST00000620219 IGHV3-35A0A0C4DH35 117 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 A0A1W2PPR1 153 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 SRRM4A7MD48 611 aaKnown RBP12.78□□□□□ -0.36
CPSF1-213ENST00000620219 RND2P52198 227 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 Q56UQ5 140 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 BBC3Q96PG8 261 aaPredicted RBP12.78□□□□□ -0.36
CPSF1-213ENST00000620219 NIPSNAP3BQ9BS92 247 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 FXYD3Q14802 87 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 ADIRFQ15847 76 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 TMPRSS5Q9H3S3 457 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 AGAP20933 346 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 NPIPB3Q92617 1050 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 FAM106CPP0CH98 169 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 ZFP82Q8N141 532 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 OR4P4Q8NGL7 312 aa12.78□□□□□ -0.36
CPSF1-213ENST00000620219 TEX50A0A1B0GTY4 177 aa12.77□□□□□ -0.36
CPSF1-213ENST00000620219 BTBD17A6NE02 478 aa12.77□□□□□ -0.36
CPSF1-213ENST00000620219 C9JQL5 133 aa12.77□□□□□ -0.36
CPSF1-213ENST00000620219 LY86O95711 162 aa12.77□□□□□ -0.36
CPSF1-213ENST00000620219 BRWD1-AS2P59051 145 aa12.77□□□□□ -0.36
CPSF1-213ENST00000620219 OR5B3Q8NH48 314 aa12.77□□□□□ -0.36
CPSF1-213ENST00000620219 C1RLQ9NZP8 487 aa12.77□□□□□ -0.36
CPSF1-213ENST00000620219 AUP1Q9Y679 476 aa12.77□□□□□ -0.36
CPSF1-213ENST00000620219 MLANAQ16655 118 aa12.77□□□□□ -0.37
CPSF1-213ENST00000620219 C1orf229Q6ZS94 237 aaPredicted RBP12.77□□□□□ -0.37
CPSF1-213ENST00000620219 OR1B1Q8NGR6 318 aa12.77□□□□□ -0.37
CPSF1-213ENST00000620219 KPTNQ9Y664 436 aa12.77□□□□□ -0.37
CPSF1-213ENST00000620219 ZNF727A8MUV8 499 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms