RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 IZUMO1RA6ND01 250 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 ZNF716A6NP11 495 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 ANKRD30BLA7E2S9 258 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 G3V3Y1 287 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 KLK10O43240 276 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 MPV17L2Q567V2 206 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 CT55Q8WUE5 264 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 C1RLQ9NZP8 487 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 IL19Q9UHD0 177 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 WASHC3Q9Y3C0 194 aa8.99□□□□□ -0.97
UPF3A-212ENST00000619079 MED12Q93074 2177 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 SPINK4O60575 86 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 CYC1P08574 325 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 USF1P22415 310 aaPredicted RBP8.98□□□□□ -0.97
UPF3A-212ENST00000619079 NPY1RP25929 384 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 ARR3P36575 388 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 KLF5Q13887 457 aaPredicted RBP8.98□□□□□ -0.97
UPF3A-212ENST00000619079 Q6P435 159 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 Q8IYB0 196 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 SVIPQ8NHG7 77 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 TMEM45BQ96B21 275 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 ZNF488Q96MN9 340 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 MGST2Q99735 147 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 TMEM70Q9BUB7 260 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 SPRY4Q9C004 299 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 COMMD5Q9GZQ3 224 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 TMEM167BQ9NRX6 74 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 DMXL2Q8TDJ6 3036 aa8.98□□□□□ -0.97
UPF3A-212ENST00000619079 GAGE12BA1L429 117 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 FAM90A9PA6NNJ1 464 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 J3QT63 122 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 REG1BP48304 166 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 EIF4EBP1Q13541 118 aaPredicted RBP8.97□□□□□ -0.97
UPF3A-212ENST00000619079 RAB31Q13636 194 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 BVES-AS1Q5T3Y7 98 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 MIC13Q5XKP0 118 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 MRPL54Q6P161 138 aaKnown RBP8.97□□□□□ -0.97
UPF3A-212ENST00000619079 OR52L2PQ8NGH6 319 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 PEF1Q9UBV8 284 aaKnown RBP8.97□□□□□ -0.97
UPF3A-212ENST00000619079 TNRC6AQ8NDV7 1962 aaKnown RBP8.97□□□□□ -0.97
UPF3A-212ENST00000619079 ZFHX4Q86UP3 3567 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 SDK2Q58EX2 2172 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 CD5LO43866 347 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 HLA-DRB1P01911 266 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 CCNOP22674 350 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 NTF4P34130 210 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 EFNB3Q15768 340 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 IGFBP7Q16270 282 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 TNXAQ16473 311 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 IBA57Q5T440 356 aaKnown RBP8.97□□□□□ -0.97
UPF3A-212ENST00000619079 EBLN2Q6P2I7 272 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 SLC25A34Q6PIV7 304 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 PQLC2Q6ZP29 291 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 GALMQ96C23 342 aa8.97□□□□□ -0.97
UPF3A-212ENST00000619079 SLC25A10Q9UBX3 287 aaPredicted RBP8.97□□□□□ -0.97
UPF3A-212ENST00000619079 C2orf70A6NJV1 201 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 C21orf140B9A014 251 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 NDUFS8O00217 210 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 CRXO43186 299 aaPredicted RBP8.96□□□□□ -0.97
UPF3A-212ENST00000619079 NUDT3O95989 172 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 NBEAP1P0C6P0 100 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 FOLR3P41439 243 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 RPL30P62888 115 aaKnown RBP8.96□□□□□ -0.97
UPF3A-212ENST00000619079 ARF1P84077 181 aaKnown RBP8.96□□□□□ -0.97
UPF3A-212ENST00000619079 RELBQ01201 579 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 AMMECR1LQ6DCA0 310 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 VHLLQ6RSH7 139 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 CLEC2AQ6UVW9 174 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 DOLPP1Q86YN1 238 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 RNASE7Q9H1E1 156 aaKnown RBP8.96□□□□□ -0.97
UPF3A-212ENST00000619079 SH2D2AQ9NP31 389 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 DEPPQ9NTK1 212 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 CRIM1Q9NZV1 1036 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 RPH3ALQ9UNE2 315 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 RAXQ9Y2V3 346 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 ACACAQ13085 2346 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 APC2O95996 2303 aa8.96□□□□□ -0.97
UPF3A-212ENST00000619079 C5orf49A4QMS7 147 aa8.96□□□□□ -0.98
UPF3A-212ENST00000619079 OR2T8A6NH00 312 aa8.96□□□□□ -0.98
UPF3A-212ENST00000619079 C17orf98A8MV24 154 aa8.96□□□□□ -0.98
UPF3A-212ENST00000619079 CORTO00230 105 aa8.96□□□□□ -0.98
UPF3A-212ENST00000619079 SS18L1O75177 396 aaPredicted RBP8.96□□□□□ -0.98
UPF3A-212ENST00000619079 OR2H2O95918 312 aa8.96□□□□□ -0.98
UPF3A-212ENST00000619079 TCL1AP56279 114 aa8.96□□□□□ -0.98
UPF3A-212ENST00000619079 SPINK9Q5DT21 86 aa8.96□□□□□ -0.98
UPF3A-212ENST00000619079 HSD17B10Q99714 261 aaKnown RBP8.96□□□□□ -0.98
UPF3A-212ENST00000619079 MS4A5Q9H3V2 200 aa8.96□□□□□ -0.98
UPF3A-212ENST00000619079 NPVFQ9HCQ7 196 aa8.96□□□□□ -0.98
UPF3A-212ENST00000619079 DKK4Q9UBT3 224 aa8.96□□□□□ -0.98
UPF3A-212ENST00000619079 KIAA1549Q9HCM3 1950 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 OR4C46A6NHA9 309 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 CCL3P10147 92 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 SLC35B1P78383 322 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 SRSF6Q13247 344 aaKnown RBP8.95□□□□□ -0.98
UPF3A-212ENST00000619079 RTL8BQ17RB0 113 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 MRPL14Q6P1L8 145 aaKnown RBP8.95□□□□□ -0.98
UPF3A-212ENST00000619079 RNASEKQ6P5S7 137 aaKnown RBP8.95□□□□□ -0.98
UPF3A-212ENST00000619079 TCF24Q7RTU0 167 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 ZNF808Q8N4W9 903 aaPredicted RBP8.95□□□□□ -0.98
UPF3A-212ENST00000619079 OR52E5Q8NH55 327 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms