RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ACAA1P09110 424 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 MC5RP33032 325 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 DUTP33316 252 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 IBA57Q5T440 356 aaKnown RBP7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 PSMG3Q9BT73 122 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 LOC389332A0A1B0GUA5 103 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 HSBP1O75506 76 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 WT1P19544 449 aaPredicted RBP7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 COL8A1P27658 744 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 GBGT1Q8N5D6 347 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 PGLYRP4Q96LB8 373 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 FOXH1O75593 365 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 TRGC1P0CF51 173 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 BRS3P32247 399 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 CYP2G1PQ6ZSU1 146 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 SFRP2Q96HF1 295 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 OR51M1Q9H341 326 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 TRBV23-1A0A0A0MS06 115 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 MPDU1O75352 247 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 IQCJQ1A5X6 159 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 SPATA31B1PQ5VZV4 182 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 LEMD1Q68G75 181 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 ASCL4Q6XD76 172 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 FA2HQ7L5A8 372 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 DNAJC4Q9NNZ3 241 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 THYN1Q9P016 225 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 UFC1Q9Y3C8 167 aa7.41□□□□□ -1.22
PDLIM5-222ENST00000615540 PGPEP1LA6NFU8 196 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 ORM1P02763 201 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 ADCYAP1P18509 176 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 GAFA1Q96PS6 74 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 YPEL1O60688 119 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 IGHG3P01860 377 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 CD81P60033 236 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 ID3Q02535 119 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 WDR73Q6P4I2 378 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 TMEM171Q8WVE6 324 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 YPEL2Q96QA6 119 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 LINC00312Q9Y6C7 94 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 A1L4Q6 167 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 C15orf61A6NNL5 157 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 ZNF253O75346 499 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 TMEM200BQ69YZ2 307 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 LYPD2Q6UXB3 125 aa7.4□□□□□ -1.22
PDLIM5-222ENST00000615540 TM4SF5O14894 197 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 GNG5P63218 68 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 KIAA1644Q3SXP7 199 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 NMSQ5H8A3 153 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 LRTM2Q8N967 370 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 IGFBPL1Q8WX77 278 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 SMDT1Q9H4I9 107 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 SEC16AO15027 2179 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 ALPK2Q86TB3 2170 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 K7EM74 188 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 LIPFP07098 398 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 SRSF7Q16629 238 aaKnown RBP eCLIP7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 CENPWQ5EE01 88 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 UNQ5815/PRO19632Q6UWF5 114 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 Q6ZRM9 215 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 IMMP2LQ96T52 175 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 MRPL18Q9H0U6 180 aaKnown RBP7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 IFI27L2Q9H2X8 130 aa7.4□□□□□ -1.23
PDLIM5-222ENST00000615540 IGHV3OR16-13A0A075B7E8 117 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 IGHV3-74A0A0B4J1X5 117 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 LY6HO94772 140 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 SPRNQ5BIV9 151 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 MMD2Q8IY49 270 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 KIR3DL3Q8N743 410 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 KLRD1Q13241 179 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 Q6ZR03 302 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 FGF23Q9GZV9 251 aaPredicted RBP7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 TEX50A0A1B0GTY4 177 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 FAM106CPP0CH98 169 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 AGAP20933 346 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 AMTP48728 403 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 SRSF4Q08170 494 aaKnown RBP7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 VN1R17PQ8TDU5 208 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 ANAPC10Q9UM13 185 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 CXorf65A6NEN9 183 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 ZNF98A6NK75 572 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 PPOXP50336 477 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 DTX1Q86Y01 620 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 FOXA2Q9Y261 457 aaPredicted RBP7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 FER1L5A0AVI2 2057 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 C8orf88P0DMB2 117 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 TCF23Q7RTU1 214 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 OR1P1Q8NH06 330 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 ELOVL1Q9BW60 279 aa7.39□□□□□ -1.23
PDLIM5-222ENST00000615540 TRAV5A0A0B4J249 113 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 UPK2O00526 184 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 RBFOX2O43251 390 aaKnown RBP eCLIP7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 ZNF207O43670 478 aaKnown RBP7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 NDUFA2O43678 99 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 S100A4P26447 101 aaKnown RBP7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 TIMP3P35625 211 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 DLX1P56177 255 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 PIMREGQ9BSJ6 248 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 IGHV3-49A0A0A0MS15 119 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 IGLV3-1P01715 115 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms