RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 IGHV1-2P23083 117 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 CHRNB4P30926 498 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 ZNF137PP52743 207 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 ZNF146Q15072 292 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 KRTCAP3Q53RY4 240 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 OR4C5Q8NGB2 326 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 OR4B1Q8NGF8 309 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 SARAFQ96BY9 339 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 OR2V2Q96R30 315 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 PRDM6Q9NQX0 595 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 NPPCP23582 126 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 CDKN1AP38936 164 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 PCP4P48539 62 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 MMDQ15546 238 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 EFNB3Q15768 340 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 COQ2Q96H96 371 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 BET1LQ9NYM9 111 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 PPIAL4AQ9Y536 164 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 TTC28Q96AY4 2481 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.48□□□□□ -0.73
LIG1-221ENST00000613670 DNLZQ5SXM8 178 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 ERASQ7Z444 233 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 ST6GALNAC3Q8NDV1 305 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 NRN1Q9NPD7 142 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 CALYQ9NYX4 217 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 YTHDF2Q9Y5A9 579 aaKnown RBP10.48□□□□□ -0.73
LIG1-221ENST00000613670 LAMA1P25391 3075 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 H3BTX0 84 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 DUTP33316 252 aaKnown RBP10.48□□□□□ -0.73
LIG1-221ENST00000613670 C1orf210Q8IVY1 113 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 UBALD2Q8IYN6 164 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 Q8NFD4 153 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 EAF1Q96JC9 268 aaPredicted RBP10.48□□□□□ -0.73
LIG1-221ENST00000613670 MGST2Q99735 147 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 DNAJC4Q9NNZ3 241 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 ZNF355PQ9NSJ1 428 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 CBY3A6NI87 242 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 NTN3O00634 580 aaPredicted RBP10.48□□□□□ -0.73
LIG1-221ENST00000613670 TMPRSS2O15393 492 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 FOXL1Q12952 345 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 ACSF3Q4G176 576 aaPredicted RBP10.48□□□□□ -0.73
LIG1-221ENST00000613670 WDR82Q6UXN9 313 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 HES4Q9HCC6 221 aa10.48□□□□□ -0.73
LIG1-221ENST00000613670 LOC102724200A0A096LPH7 203 aaPredicted RBP10.47□□□□□ -0.73
LIG1-221ENST00000613670 STAG3L2P0CL84 134 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 STAG3L3P0CL85 134 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 CD99P14209 185 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 ETFRF1Q6IPR1 90 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 VWA1Q6PCB0 445 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 CCL13Q99616 98 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 VPS25Q9BRG1 176 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 TMEM208Q9BTX3 173 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 OPN3Q9H1Y3 402 aaPredicted RBP10.47□□□□□ -0.73
LIG1-221ENST00000613670 UQCR10Q9UDW1 63 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 DPRXA6NFQ7 191 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 TDGF1P3P51864 188 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 KLF3P57682 345 aaPredicted RBP10.47□□□□□ -0.73
LIG1-221ENST00000613670 HARBI1Q96MB7 349 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 GNB4Q9HAV0 340 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 RNF24Q9Y225 148 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 CECR9P0C854 216 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 LINC00869P0C866 280 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 TDRG1Q3Y452 100 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 ITLN1Q8WWA0 313 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 ST6GALNAC6Q969X2 333 aa10.47□□□□□ -0.73
LIG1-221ENST00000613670 MBNL3Q9NUK0 354 aaKnown RBP10.47□□□□□ -0.73
LIG1-221ENST00000613670 MRPS18CQ9Y3D5 142 aaKnown RBP10.47□□□□□ -0.73
LIG1-221ENST00000613670 MT-ND6P03923 174 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 GPR6P46095 362 aaPredicted RBP10.46□□□□□ -0.73
LIG1-221ENST00000613670 FOXA3P55318 350 aaPredicted RBP10.46□□□□□ -0.73
LIG1-221ENST00000613670 BPIFB3P59826 476 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 ASPHD1Q5U4P2 390 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 OR4A47Q6IF82 309 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 RNF2Q99496 336 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 CACNA1BQ00975 2339 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 ARFGEF3Q5TH69 2177 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 C9orf172C9J069 976 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 KIR2DS2P43631 304 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 OR1B1Q8NGR6 318 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 PYGO2Q9BRQ0 406 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 PRNDQ9UKY0 176 aa10.46□□□□□ -0.73
LIG1-221ENST00000613670 CPAMD8Q8IZJ3 1885 aa10.46□□□□□ -0.74
LIG1-221ENST00000613670 NPIPB11E5RHQ5 1161 aa10.46□□□□□ -0.74
LIG1-221ENST00000613670 DLEU1O43261 78 aa10.46□□□□□ -0.74
LIG1-221ENST00000613670 SUB1P53999 127 aaKnown RBP eCLIP10.46□□□□□ -0.741e-16■■■■■ 45.6
LIG1-221ENST00000613670 TNFAIP6P98066 277 aaPredicted RBP10.46□□□□□ -0.74
LIG1-221ENST00000613670 YLPM1P49750 1951 aaKnown RBP10.46□□□□□ -0.74
LIG1-221ENST00000613670 ABCA4P78363 2273 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 IQCF6A8MYZ5 107 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 C21orf140B9A014 251 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 F2Z2F3 143 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 TNFSF13O75888 250 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 HLA-DQA1P01909 254 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 TCTAP57738 103 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 Q6ZWC4 215 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 LRP4O75096 1905 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 SPTAN1Q13813 2472 aaKnown RBP10.45□□□□□ -0.74
LIG1-221ENST00000613670 NPSP0C0P6 89 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 DEFB109BQ30KR1 87 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 MORN2Q502X0 79 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms