RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 RPL8P62917 257 aaKnown RBP11.5□□□□□ -0.57
LIG1-214ENST00000597146 RNASE12Q5GAN4 147 aaKnown RBP11.5□□□□□ -0.57
LIG1-214ENST00000597146 ZNF818PQ6ZRF7 136 aa11.5□□□□□ -0.57
LIG1-214ENST00000597146 OR4A5Q8NH83 315 aa11.5□□□□□ -0.57
LIG1-214ENST00000597146 TMEM167AQ8TBQ9 72 aa11.5□□□□□ -0.57
LIG1-214ENST00000597146 C15orf40Q8WUR7 153 aa11.5□□□□□ -0.57
LIG1-214ENST00000597146 CACNG8Q8WXS5 425 aa11.5□□□□□ -0.57
LIG1-214ENST00000597146 TP53TG1Q9Y2A0 90 aa11.5□□□□□ -0.57
LIG1-214ENST00000597146 HMX3A6NHT5 357 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 GABARAPO95166 117 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 PRH1P02810 166 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 RPA2P15927 270 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 NQO2P16083 231 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 NAT1P18440 290 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 GNRHRP30968 328 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 RCVRNP35243 200 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 TAS2R31P59538 309 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 RHOGP84095 191 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 ZNF45Q02386 682 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 CTF1Q16619 201 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 C10orf55Q5SWW7 151 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 CLVS1Q8IUQ0 354 aaPredicted RBP11.49□□□□□ -0.57
LIG1-214ENST00000597146 LYSMD2Q8IV50 215 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 TMEM61Q8N0U2 210 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 ADAD2Q8NCV1 583 aaKnown RBP11.49□□□□□ -0.57
LIG1-214ENST00000597146 GPX8Q8TED1 209 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 FCAMRQ8WWV6 532 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 MOB3AQ96BX8 217 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 COMMD5Q9GZQ3 224 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 EXTL2Q9UBQ6 330 aa11.49□□□□□ -0.57
LIG1-214ENST00000597146 C2orf70A6NJV1 201 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 FAM223BA6NKX1 122 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 GPR31O00270 319 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 RBFOX2O43251 390 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIG1-214ENST00000597146 PGLYRP1O75594 196 aaPredicted RBP11.48□□□□□ -0.57
LIG1-214ENST00000597146 SNAPC5O75971 98 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 FOLR2P14207 255 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 HLA-GP17693 338 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 LPAR6P43657 344 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 NANOS2P60321 138 aaKnown RBP11.48□□□□□ -0.57
LIG1-214ENST00000597146 EIF4EBP1Q13541 118 aaPredicted RBP11.48□□□□□ -0.57
LIG1-214ENST00000597146 OR4A47Q6IF82 309 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 FAM223AQ8IWN6 122 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 PUSL1Q8N0Z8 303 aaKnown RBP11.48□□□□□ -0.57
LIG1-214ENST00000597146 TTC9CQ8N5M4 171 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 TMEM217Q8N7C4 229 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 OR52B4Q8NGK2 314 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 PLEKHA2Q9HB19 425 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 FBXL17Q9UF56 701 aa11.48□□□□□ -0.57
LIG1-214ENST00000597146 PRSS29PA6NIE9 313 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 CYB5BO43169 146 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 OR2J3O76001 311 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 RLN1P04808 185 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 PGAM2P15259 253 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 F2RP25116 425 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 MRGPRG-AS1Q2M3A8 158 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 PHLDA2Q53GA4 152 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 Q6ZWC4 215 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 ZNF575Q86XF7 245 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 NECAP1Q8NC96 275 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 DGCR14Q96DF8 476 aaKnown RBP11.47□□□□□ -0.57
LIG1-214ENST00000597146 HINT2Q9BX68 163 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 AKIP1Q9NQ31 210 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 SLC2A9Q9NRM0 540 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 BET1LQ9NYM9 111 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 FBXL7Q9UJT9 491 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 ZNF257Q9Y2Q1 563 aa11.47□□□□□ -0.57
LIG1-214ENST00000597146 UPK2O00526 184 aa11.46□□□□□ -0.57
LIG1-214ENST00000597146 KRASP01116 189 aa11.46□□□□□ -0.57
LIG1-214ENST00000597146 CTRB1P17538 263 aa11.46□□□□□ -0.57
LIG1-214ENST00000597146 ALDH3B2P48448 385 aa11.46□□□□□ -0.57
LIG1-214ENST00000597146 BRWD1-AS2P59051 145 aa11.46□□□□□ -0.57
LIG1-214ENST00000597146 EXOSC2Q13868 293 aaKnown RBP11.46□□□□□ -0.57
LIG1-214ENST00000597146 RNASE10Q5GAN6 216 aaKnown RBP11.46□□□□□ -0.57
LIG1-214ENST00000597146 CTRB2Q6GPI1 263 aa11.46□□□□□ -0.57
LIG1-214ENST00000597146 RNF183Q96D59 192 aa11.46□□□□□ -0.57
LIG1-214ENST00000597146 TECRQ9NZ01 308 aaKnown RBP11.46□□□□□ -0.57
LIG1-214ENST00000597146 ANAPC10Q9UM13 185 aa11.46□□□□□ -0.57
LIG1-214ENST00000597146 M0QYG6 137 aa11.45□□□□□ -0.58
LIG1-214ENST00000597146 SCAF4O95104 1147 aaKnown RBP11.45□□□□□ -0.58
LIG1-214ENST00000597146 S1PR2O95136 353 aa11.45□□□□□ -0.58
LIG1-214ENST00000597146 HLA-AP01891 365 aaKnown RBP11.45□□□□□ -0.58
LIG1-214ENST00000597146 IL6RP08887 468 aaPredicted RBP11.45□□□□□ -0.58
LIG1-214ENST00000597146 HIST1H1BP16401 226 aaKnown RBP11.45□□□□□ -0.58
LIG1-214ENST00000597146 APOC4P55056 127 aa11.45□□□□□ -0.58
LIG1-214ENST00000597146 TM4SF20Q53R12 229 aa11.45□□□□□ -0.58
LIG1-214ENST00000597146 FAM209BQ5JX69 171 aa11.45□□□□□ -0.58
LIG1-214ENST00000597146 RAB2BQ8WUD1 216 aa11.45□□□□□ -0.58
LIG1-214ENST00000597146 TMEM140Q9NV12 185 aa11.45□□□□□ -0.58
LIG1-214ENST00000597146 COMMD9Q9P000 198 aa11.45□□□□□ -0.58
LIG1-214ENST00000597146 NPIPB5A8MRT5 1133 aa11.44□□□□□ -0.58
LIG1-214ENST00000597146 PPP5D1E7EU14 171 aa11.44□□□□□ -0.58
LIG1-214ENST00000597146 REG1AP05451 166 aa11.44□□□□□ -0.58
LIG1-214ENST00000597146 ZNF735P0CB33 412 aa11.44□□□□□ -0.58
LIG1-214ENST00000597146 TRAPPC2P0DI81 140 aa11.44□□□□□ -0.58
LIG1-214ENST00000597146 TRAPPC2BP0DI82 140 aa11.44□□□□□ -0.58
LIG1-214ENST00000597146 PSMB6P28072 239 aa11.44□□□□□ -0.58
LIG1-214ENST00000597146 RPL5P46777 297 aaKnown RBP11.44□□□□□ -0.58
LIG1-214ENST00000597146 TMBIM6P55061 237 aa11.44□□□□□ -0.58
LIG1-214ENST00000597146 RBMS2Q15434 407 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms