RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 OR4D10Q8NGI6 311 aa11.52□□□□□ -0.57
TRIM28-205ENST00000595028 ZNF486Q96H40 463 aaPredicted RBP11.52□□□□□ -0.57
TRIM28-205ENST00000595028 DIRAS2Q96HU8 199 aa11.52□□□□□ -0.57
TRIM28-205ENST00000595028 SLIRPQ9GZT3 109 aaKnown RBP11.52□□□□□ -0.57
TRIM28-205ENST00000595028 C6orf62Q9GZU0 229 aaPredicted RBP11.52□□□□□ -0.57
TRIM28-205ENST00000595028 STAB2Q8WWQ8 2551 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 HUWE1Q7Z6Z7 4374 aaKnown RBP11.51□□□□□ -0.57
TRIM28-205ENST00000595028 TEX50A0A1B0GTY4 177 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 C15orf61A6NNL5 157 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 PPP5D1E7EU14 171 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 SNAPC5O75971 98 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 RAB3DO95716 219 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 TRAPPC2P0DI81 140 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 TRAPPC2BP0DI82 140 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 PTBP1P26599 531 aaKnown RBP eCLIP11.51□□□□□ -0.57
TRIM28-205ENST00000595028 IL18Q14116 193 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 HSD17B13Q7Z5P4 300 aaPredicted RBP11.51□□□□□ -0.57
TRIM28-205ENST00000595028 GDPD1Q8N9F7 314 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 OR10W1Q8NGF6 305 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 OR1L8Q8NGR8 309 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 EEF1AKMT3Q96AZ1 226 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 TSC22D3Q99576 134 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 RABL2AQ9UBK7 228 aaPredicted RBP11.51□□□□□ -0.57
TRIM28-205ENST00000595028 RABL2BQ9UNT1 228 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 NSG2Q9Y328 171 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 DMRT1Q9Y5R6 373 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 SMAD5-AS1Q9Y6J3 95 aa11.51□□□□□ -0.57
TRIM28-205ENST00000595028 MFSD2BA6NFX1 497 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 H0Y980 276 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 CTDSPLO15194 276 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 IGKV1-39P01597 117 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 IGHV3-23P01764 117 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 IGKV1D-39P04432 117 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 CSN3P07498 182 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 PI3P19957 117 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 PIGPP57054 158 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 WT1-ASQ06250 92 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 STEAP1BQ6NZ63 245 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 LSM10Q969L4 123 aaKnown RBP11.5□□□□□ -0.57
TRIM28-205ENST00000595028 MRGPRFQ96AM1 343 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 SEC22AQ96IW7 307 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 NDUFA4L2Q9NRX3 87 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 TMEM14BQ9NUH8 114 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 SIGLEC8Q9NYZ4 499 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 PEMTQ9UBM1 199 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 PRNDQ9UKY0 176 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 OR51B2Q9Y5P1 312 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 S4R3C0 116 aa11.5□□□□□ -0.57
TRIM28-205ENST00000595028 DBX1A6NMT0 343 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 GGCTO75223 188 aaKnown RBP11.49□□□□□ -0.57
TRIM28-205ENST00000595028 SERPINE2P07093 398 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 OR13C7P0DN81 318 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 ARL3P36405 182 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 MEF2DQ14814 521 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 SCGB2B2Q4G0G5 96 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 FAAP20Q6NZ36 180 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 CLEC19AQ6UXS0 136 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 OR13C8Q8NGS7 320 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 OR5B3Q8NH48 314 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 TERB2Q8NHR7 220 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 CXorf58Q96LI9 332 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 HINT2Q9BX68 163 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 FKBP11Q9NYL4 201 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 CEPT1Q9Y6K0 416 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 DNAH7Q8WXX0 4024 aa11.49□□□□□ -0.57
TRIM28-205ENST00000595028 LYSTQ99698 3801 aa11.48□□□□□ -0.57
TRIM28-205ENST00000595028 HLA-AP01891 365 aaKnown RBP11.48□□□□□ -0.57
TRIM28-205ENST00000595028 H2BFWTQ7Z2G1 175 aa11.48□□□□□ -0.57
TRIM28-205ENST00000595028 CCDC71LQ8N9Z2 235 aa11.48□□□□□ -0.57
TRIM28-205ENST00000595028 MCFD2Q8NI22 146 aa11.48□□□□□ -0.57
TRIM28-205ENST00000595028 ZNF502Q8TBZ5 544 aa11.48□□□□□ -0.57
TRIM28-205ENST00000595028 NXF2Q9GZY0 626 aaKnown RBP11.48□□□□□ -0.57
TRIM28-205ENST00000595028 THYN1Q9P016 225 aa11.48□□□□□ -0.57
TRIM28-205ENST00000595028 COPZ2Q9P299 210 aa11.48□□□□□ -0.57
TRIM28-205ENST00000595028 TRBV7-1A0A0A6YYK4 115 aa11.47□□□□□ -0.57
TRIM28-205ENST00000595028 CYB5BO43169 146 aa11.47□□□□□ -0.57
TRIM28-205ENST00000595028 OR2C1O95371 312 aa11.47□□□□□ -0.57
TRIM28-205ENST00000595028 CTSDP07339 412 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-205ENST00000595028 AKAIN1P0CW23 69 aa11.47□□□□□ -0.57
TRIM28-205ENST00000595028 OR4C16Q8NGL9 310 aa11.47□□□□□ -0.57
TRIM28-205ENST00000595028 ZFAND1Q8TCF1 268 aa11.47□□□□□ -0.57
TRIM28-205ENST00000595028 MARCH1Q8TCQ1 289 aa11.47□□□□□ -0.57
TRIM28-205ENST00000595028 TMEM56Q96MV1 263 aa11.47□□□□□ -0.57
TRIM28-205ENST00000595028 TP53RKQ96S44 253 aa11.47□□□□□ -0.57
TRIM28-205ENST00000595028 RSL24D1Q9UHA3 163 aaKnown RBP11.47□□□□□ -0.57
TRIM28-205ENST00000595028 F11RQ9Y624 299 aaKnown RBP11.47□□□□□ -0.57
TRIM28-205ENST00000595028 C3orf85A0A1B0GTC6 90 aa11.46□□□□□ -0.57
TRIM28-205ENST00000595028 DISC1C4P0D8 188 aa11.46□□□□□ -0.57
TRIM28-205ENST00000595028 LGALS9O00182 355 aa11.46□□□□□ -0.57
TRIM28-205ENST00000595028 GSTZ1O43708 216 aaPredicted RBP11.46□□□□□ -0.57
TRIM28-205ENST00000595028 NHLRC4P0CG21 123 aaPredicted RBP11.46□□□□□ -0.57
TRIM28-205ENST00000595028 GPR183P32249 361 aa11.46□□□□□ -0.57
TRIM28-205ENST00000595028 MECP2P51608 486 aaKnown RBP11.46□□□□□ -0.57
TRIM28-205ENST00000595028 MFAP2P55001 183 aa11.46□□□□□ -0.57
TRIM28-205ENST00000595028 LCN12Q6JVE5 192 aa11.46□□□□□ -0.57
TRIM28-205ENST00000595028 ADAMTSL5Q6ZMM2 481 aa11.46□□□□□ -0.57
TRIM28-205ENST00000595028 GPHB5Q86YW7 130 aa11.46□□□□□ -0.57
TRIM28-205ENST00000595028 Q8N402 240 aa11.46□□□□□ -0.57
TRIM28-205ENST00000595028 OR2K2Q8NGT1 345 aa11.46□□□□□ -0.57
TRIM28-205ENST00000595028 OR4A16Q8NH70 328 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms