RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 EIF3GO75821 320 aaKnown RBP eCLIP8.19□□□□□ -1.1
LIG3-216ENST00000593099 MOSP00540 346 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 FABP2P12104 132 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 MPZP25189 248 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 RIPPLY3P57055 190 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 SLC25A28Q96A46 364 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 Q96MF0 132 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 GPHA2Q96T91 129 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 NPDC1Q9NQX5 325 aaPredicted RBP8.19□□□□□ -1.1
LIG3-216ENST00000593099 IGLV3-9A0A075B6K5 115 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 NDUFS6O75380 124 aaKnown RBP8.19□□□□□ -1.1
LIG3-216ENST00000593099 SNCGO76070 127 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 S1PR2O95136 353 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 INHBBP09529 407 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 PAFAH1B2P68402 229 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 HEPN1Q6WQI6 88 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 OR52M1Q8NGK5 317 aa8.19□□□□□ -1.1
LIG3-216ENST00000593099 C1QL1O75973 258 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 ERASQ7Z444 233 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 CD177Q8N6Q3 437 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 MRPL20Q9BYC9 149 aaKnown RBP8.18□□□□□ -1.1
LIG3-216ENST00000593099 FBXL15Q9H469 300 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 SLC25A22Q9H936 323 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 SLC45A2Q9UMX9 530 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 RHOBP62745 196 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 PRB3Q04118 309 aaPredicted RBP8.18□□□□□ -1.1
LIG3-216ENST00000593099 TIGITQ495A1 244 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 SEM1Q6ZVN7 128 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 C10orf126Q8N4M7 172 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 BEX4Q9NWD9 120 aaPredicted RBP8.18□□□□□ -1.1
LIG3-216ENST00000593099 ATRXP46100 2492 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 TRBV6-7A0A0A0MS04 114 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 IGHV3-21A0A0B4J1V1 117 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 M0R1W7 72 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 OR8I2Q8N0Y5 310 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 LSM10Q969L4 123 aaKnown RBP8.18□□□□□ -1.1
LIG3-216ENST00000593099 PRSS22Q9GZN4 317 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 ZNF331Q9NQX6 463 aaPredicted RBP8.18□□□□□ -1.1
LIG3-216ENST00000593099 DOCK10Q96BY6 2186 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 SLC25A4P12235 298 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 GATA4P43694 442 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 TMEM200BQ69YZ2 307 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 BTNL8Q6UX41 500 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 OR1B1Q8NGR6 318 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 PIEZO2Q9H5I5 2752 aa8.18□□□□□ -1.1
LIG3-216ENST00000593099 PSPNO60542 156 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 LINC00614P0C842 121 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 GATA3P23771 443 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 FBXL19-AS1Q494R0 122 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 MORN2Q502X0 79 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 CBLN2Q8IUK8 224 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 GAFA1Q96PS6 74 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 SRSF10O75494 262 aaKnown RBP8.17□□□□□ -1.1
LIG3-216ENST00000593099 WISP2O76076 250 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 MSMBP08118 114 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 MIDNQ504T8 468 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 C12orf54Q6X4T0 127 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 OR4X2Q8NGF9 303 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 GPR146Q96CH1 333 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 FBXL17Q9UF56 701 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 TCF19Q9Y242 345 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 FAM90A26D6RGX4 464 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 HINT1P49773 126 aaPredicted RBP8.17□□□□□ -1.1
LIG3-216ENST00000593099 DYNLT3P51808 116 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 ATP5G2Q06055 141 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 ZNF324BQ6AW86 544 aaPredicted RBP8.17□□□□□ -1.1
LIG3-216ENST00000593099 MYPOPQ86VE0 399 aaPredicted RBP8.17□□□□□ -1.1
LIG3-216ENST00000593099 Q8TCH9 128 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 OR10C1Q96KK4 312 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 RCC2Q9P258 522 aaKnown RBP8.17□□□□□ -1.1
LIG3-216ENST00000593099 COX11Q9Y6N1 276 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 F8VVB4 439 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 F8VWA3 439 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 PF4P02776 101 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 DAZAP2Q15038 168 aaPredicted RBP8.17□□□□□ -1.1
LIG3-216ENST00000593099 VMO1Q7Z5L0 202 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 NHLRC2Q8NBF2 726 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 C1orf43Q9BWL3 253 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 C5orf66Q9H5L9 145 aa8.17□□□□□ -1.1
LIG3-216ENST00000593099 SHISA9B4DS77 424 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 IGHV1-8P0DP01 117 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 FAM106AQ4KMX7 169 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 MINOS1Q5TGZ0 78 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 LYPD2Q6UXB3 125 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 Q6ZR03 302 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 NR2C2APQ86WQ0 139 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 NECAP1Q8NC96 275 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 CLDND2Q8NHS1 167 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 SLC25A33Q9BSK2 321 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 MINOS1-NBL1R4GNA1 71 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 IGKV1D-17A0A075B6S4 117 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 OOSP1A8MZH6 123 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 VSIG10L2P0DP72 767 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 TEPPQ6URK8 271 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 DPPA3Q6W0C5 159 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 ZNF843Q8N446 348 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 OR4A5Q8NH83 315 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 WSB1Q9Y6I7 421 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 CD55P08174 381 aa8.16□□□□□ -1.1
LIG3-216ENST00000593099 SOD3P08294 240 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms