RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 LSM10Q969L4 123 aaKnown RBP8.02□□□□□ -1.13
LIG3-212ENST00000590181 MARC2Q969Z3 335 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 NDUFA4L2Q9NRX3 87 aa8.02□□□□□ -1.13
LIG3-212ENST00000590181 LCE6AA0A183 80 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 MEIS3P1A6NDR6 274 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 CTDSPLO15194 276 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 CD74P04233 296 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 RLN1P04808 185 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 SERPINE2P07093 398 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 LPAR6P43657 344 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 MECP2P51608 486 aaKnown RBP8.01□□□□□ -1.13
LIG3-212ENST00000590181 SYNJ2BPP57105 145 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 ZNF45Q02386 682 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 SGPP2Q8IWX5 399 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 GDPD1Q8N9F7 314 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 CCDC71LQ8N9Z2 235 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 DEDD2Q8WXF8 326 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 FANCD2OSQ96PS1 177 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 ZMAT4Q9H898 229 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 TMEM14BQ9NUH8 114 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 CCDC59Q9P031 241 aaKnown RBP8.01□□□□□ -1.13
LIG3-212ENST00000590181 EXTL2Q9UBQ6 330 aa8.01□□□□□ -1.13
LIG3-212ENST00000590181 RSL24D1Q9UHA3 163 aaKnown RBP8.01□□□□□ -1.13
LIG3-212ENST00000590181 IGLV11-55A0A075B6I3 123 aa8□□□□□ -1.13
LIG3-212ENST00000590181 IGLC7A0M8Q6 106 aa8□□□□□ -1.13
LIG3-212ENST00000590181 HMX3A6NHT5 357 aa8□□□□□ -1.13
LIG3-212ENST00000590181 BMPR1BO00238 502 aa8□□□□□ -1.13
LIG3-212ENST00000590181 RGS5O15539 181 aa8□□□□□ -1.13
LIG3-212ENST00000590181 OR2J3O76001 311 aa8□□□□□ -1.13
LIG3-212ENST00000590181 S1PR2O95136 353 aa8□□□□□ -1.13
LIG3-212ENST00000590181 KRASP01116 189 aa8□□□□□ -1.13
LIG3-212ENST00000590181 CSN3P07498 182 aa8□□□□□ -1.13
LIG3-212ENST00000590181 MYOD1P15172 320 aa8□□□□□ -1.13
LIG3-212ENST00000590181 ANKRD55Q3KP44 614 aa8□□□□□ -1.13
LIG3-212ENST00000590181 IL34Q6ZMJ4 242 aa8□□□□□ -1.13
LIG3-212ENST00000590181 H2BFWTQ7Z2G1 175 aa8□□□□□ -1.13
LIG3-212ENST00000590181 OR4A16Q8NH70 328 aa8□□□□□ -1.13
LIG3-212ENST00000590181 SCGB3A2Q96PL1 93 aa8□□□□□ -1.13
LIG3-212ENST00000590181 TXN2Q99757 166 aa8□□□□□ -1.13
LIG3-212ENST00000590181 ALMS1Q8TCU4 4167 aa8□□□□□ -1.13
LIG3-212ENST00000590181 TRAV25A0A0B4J276 109 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 TEX50A0A1B0GTY4 177 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 A8MWP6 167 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 E7EUB6 86 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 INS-IGF2F8WCM5 200 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 CLEC3BP05452 202 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 APELAP0DMC3 54 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 AREGP15514 252 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 ARL3P36405 182 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 ZNF585BQ52M93 769 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 C10orf55Q5SWW7 151 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 TBC1D26Q86UD7 250 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 LHFPL1Q86WI0 220 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 FAM219AQ8IW50 185 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 OR1P1Q8NH06 330 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 BSCL2Q96G97 398 aaPredicted RBP7.99□□□□□ -1.13
LIG3-212ENST00000590181 SEC22AQ96IW7 307 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 RCHY1Q96PM5 261 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 KLK11Q9UBX7 282 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 UFC1Q9Y3C8 167 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 OR51B2Q9Y5P1 312 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 F11RQ9Y624 299 aaKnown RBP7.99□□□□□ -1.13
LIG3-212ENST00000590181 HYDINQ4G0P3 5121 aa7.99□□□□□ -1.13
LIG3-212ENST00000590181 C15orf61A6NNL5 157 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 DISC1C4P0D8 188 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 RAB3DO95716 219 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 CD5P06127 495 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 OR13C7P0DN81 318 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 LYL1P12980 280 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 FCGR2BP31994 310 aaPredicted RBP7.98□□□□□ -1.13
LIG3-212ENST00000590181 SUB1P53999 127 aaKnown RBP eCLIP7.98□□□□□ -1.13
LIG3-212ENST00000590181 HSPE1P61604 102 aaKnown RBP7.98□□□□□ -1.13
LIG3-212ENST00000590181 ERHP84090 104 aaKnown RBP7.98□□□□□ -1.13
LIG3-212ENST00000590181 STEAP1BQ6NZ63 245 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 CLVS1Q8IUQ0 354 aaPredicted RBP7.98□□□□□ -1.13
LIG3-212ENST00000590181 ZNF114Q8NC26 417 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 OR52I2Q8NH67 350 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 ZNF502Q8TBZ5 544 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 DYNC2LI1Q8TCX1 351 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 SMIM4Q8WVI0 70 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 DIRAS2Q96HU8 199 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 ABHD1Q96SE0 405 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 GPHA2Q96T91 129 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 PRRT1Q99946 306 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 FXYD6Q9H0Q3 95 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 ZC4H2Q9NQZ6 224 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 SLC2A8Q9NY64 477 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 MRPL27Q9P0M9 148 aaKnown RBP7.98□□□□□ -1.13
LIG3-212ENST00000590181 COPZ2Q9P299 210 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 DMRT1Q9Y5R6 373 aa7.98□□□□□ -1.13
LIG3-212ENST00000590181 A0A1B0GW64 132 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 C2orf70A6NJV1 201 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 CGB1A6NKQ9 187 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 K7EMT4 169 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 CORTO00230 105 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 GSTZ1O43708 216 aaPredicted RBP7.97□□□□□ -1.13
LIG3-212ENST00000590181 RBMXL2O75526 392 aaKnown RBP7.97□□□□□ -1.13
LIG3-212ENST00000590181 SCGB2A1O75556 95 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 NDUFB8O95169 186 aa7.97□□□□□ -1.13
LIG3-212ENST00000590181 PRH1P02810 166 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms