RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 SPNS3Q6ZMD2 512 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 RASSF6Q6ZTQ3 369 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 OLIG3Q7RTU3 272 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SLC36A1Q7Z2H8 476 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 GRINAQ7Z429 371 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 RIMKLAQ8IXN7 391 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 MKXQ8IYA7 352 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 TMEM256Q8N2U0 113 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 LRRC18Q8N456 261 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 LINC00337Q8N6G1 96 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF439Q8NDP4 499 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SLC26A10Q8NG04 563 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 OR2M7Q8NG81 312 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 OR10A6Q8NH74 314 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SYNPRQ8TBG9 265 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 ORAOV1Q8WV07 137 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 TMBIM1Q969X1 311 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SMIM19Q96E16 107 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 NEURL3Q96EH8 262 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 TBX5Q99593 518 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 CMSS1Q9BQ75 279 aaKnown RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SCRT1Q9BWW7 348 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 FAM96AQ9H5X1 160 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 METTL17Q9H7H0 456 aaPredicted RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 PARP11Q9NR21 331 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 C8orf17Q9NRJ1 99 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 ZNRD1Q9P1U0 126 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 COPZ2Q9P299 210 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 SMPXQ9UHP9 88 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF222Q9UK12 451 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 NEU3Q9UQ49 428 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 BAIAP2Q9UQB8 552 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 KLF13Q9Y2Y9 288 aaPredicted RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 INSIG2Q9Y5U4 225 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 TMEM56-RWDD3S4R434 201 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 TET2Q6N021 2002 aaPredicted RBP1.94□□□□□ -2.1
VPS4B-203ENST00000588323 CSPG4Q6UVK1 2322 aa1.94□□□□□ -2.1
VPS4B-203ENST00000588323 MED13Q9UHV7 2174 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 APCP25054 2843 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 THADAQ6YHU6 1953 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 A0A096LNJ9 63 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 IGHV3-72A0A0B4J1Y9 119 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 TRAV8-2A0A0B4J237 113 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 IGHV7-4-1A0A0J9YVY3 117 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 LOC389332A0A1B0GUA5 103 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 DAPL1A0PJW8 107 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 C20orf202A1L168 122 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 PGPA6NDG6 321 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 CLDN24A6NM45 220 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 CEACAM18A8MTB9 384 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 H0YJW9 148 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 H3BP45 60 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 K7EP13 123 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 K7ERU9 68 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 GPR31O00270 319 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 DLEU1O43261 78 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 S1PR2O95136 353 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 PSG2P11465 335 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 SPNP16150 400 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF823P16415 610 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 PYCR1P32322 319 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 GABRA4P48169 554 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 PSMD8P48556 350 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 PIGPP57054 158 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 SYCNQ0VAF6 134 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 PPP1R1AQ13522 171 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 GRK1Q15835 563 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 KCNJ8Q15842 424 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 UBE2SQ16763 222 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF404Q494X3 552 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 Q499Y3 187 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 TMEM128Q5BJH2 165 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 C9orf64Q5T6V5 341 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 TSPO2Q5TGU0 170 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 FAM78BQ5VT40 261 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 FAM71E1Q6IPT2 247 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 DCUN1D2Q6PH85 259 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 CASP12Q6UXS9 341 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 DGAT2L6Q6ZPD8 337 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 NTM-AS1Q6ZSK4 140 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 FAM231DQ6ZW35 169 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 COMMD7Q86VX2 200 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 SMIM20Q8N5G0 67 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 DEFB119Q8N690 84 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 OR8J3Q8NGG0 315 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 TERB2Q8NHR7 220 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 MCFD2Q8NI22 146 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF420Q8TAQ5 688 aaPredicted RBP1.93□□□□□ -2.1
VPS4B-203ENST00000588323 C1orf54Q8WWF1 131 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 CCL17Q92583 94 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 NARS2Q96I59 477 aaKnown RBP1.93□□□□□ -2.1
VPS4B-203ENST00000588323 FOPNLQ96NB1 174 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 GPER1Q99527 375 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 ZNF649Q9BS31 505 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 TBL1XR1Q9BZK7 514 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 ULBP3Q9BZM4 244 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 SLC25A31Q9H0C2 315 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 PLEKHF2Q9H8W4 249 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 TPT1P8Q9HAU6 139 aa1.93□□□□□ -2.1
VPS4B-203ENST00000588323 LHX9Q9NQ69 397 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms