RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 ACOT6Q3I5F7 207 aaPredicted RBP1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 ALKAL1Q6UXT8 129 aa1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 Q6ZRN7 208 aaPredicted RBP1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 Q6ZS49 121 aa1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 SLC36A1Q7Z2H8 476 aa1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 TRAPPC5Q8IUR0 188 aa1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 TMEM86BQ8N661 226 aa1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 MCFD2Q8NI22 146 aa1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 ZNF563Q8TA94 476 aa1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 ZNF625Q96I27 306 aaPredicted RBP1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 CCDC42Q96M95 316 aa1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 NAA38Q9BRA0 125 aaKnown RBP1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 COMMD5Q9GZQ3 224 aa1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 WDR61Q9GZS3 305 aaKnown RBP1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 MYO3BQ8WXR4 1341 aa1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 PLB1Q6P1J6 1458 aa1.37□□□□□ -2.19
SMCHD1-209ENST00000583441 STRCP1A6NGW2 1772 aa1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 TGIF2-C20orf24A0A0A6YYL0 155 aa1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 TRBV10-2A0A0K0K1G8 114 aa1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 GGT3PA6NGU5 568 aa1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 ZNF737O75373 536 aa1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 PPBPP02775 128 aa1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 METTL15P1P0C7V9 234 aa1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 STX5Q13190 355 aa1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 TMEM155Q4W5P6 130 aa1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 SPOPLQ6IQ16 392 aa1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 RPL22L1Q6P5R6 122 aaKnown RBP1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 RPS19BP1Q86WX3 136 aaKnown RBP1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 MRPL30Q8TCC3 161 aaKnown RBP1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 PARD6GQ9BYG4 376 aaPredicted RBP1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 OR8D2Q9GZM6 311 aa1.36□□□□□ -2.19
SMCHD1-209ENST00000583441 FLT4P35916 1363 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 PQLC2LA1A4F0 135 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 CLDN24A6NM45 220 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 CIAO1O76071 339 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 HLA-DRB1P01911 266 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 TRGC1P0CF51 173 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 ZNF705BP0CI00 300 aaPredicted RBP1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 HIST1H1TP22492 207 aaPredicted RBP1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 MAGEA12P43365 314 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 ELOBQ15370 118 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 LPCAT3Q6P1A2 487 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 CLDN22Q8N7P3 220 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 OR8B3Q8NGG8 313 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 OR13C4Q8NGS5 318 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 C11orf40Q8WZ69 217 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 PPP1R14BQ96C90 147 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 HSPB9Q9BQS6 159 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 ULBP3Q9BZM4 244 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 CISHQ9NSE2 258 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 UBAP1Q9NZ09 502 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 SCAF11Q99590 1463 aaKnown RBP1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 ITGB4P16144 1822 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 NAV1Q8NEY1 1877 aa1.35□□□□□ -2.19
SMCHD1-209ENST00000583441 KPNA3O00505 521 aaPredicted RBP1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 CHP2O43745 196 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 ORC5O43913 435 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 IFNA10P01566 189 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 S100A6P06703 90 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 HIST1H2BOP23527 126 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 HIST1H2BBP33778 126 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 AQP4P55087 323 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 HIST1H2BDP58876 126 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 SNRPD2P62316 118 aaKnown RBP1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 HIST1H2BCP62807 126 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 HBA1P69905 142 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 HIST2H2BEQ16778 126 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 FAM27BQ5VT28 67 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 AADACL3Q5VUY0 350 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 C7orf65Q6ZTY9 151 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 DHFR2Q86XF0 187 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 OR2T4Q8NH00 348 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 RASSF5Q8WWW0 418 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 MBD3L1Q8WWY6 194 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 HIST1H2BHQ93079 126 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 BORCS7Q96B45 105 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 HIST1H2BNQ99877 126 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 HIST1H2BMQ99879 126 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 NIPSNAP1Q9BPW8 284 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 CYSTM1Q9H1C7 97 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 UCK1Q9HA47 277 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 NYNRINQ9P2P1 1898 aaKnown RBP1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 MPDZO75970 2070 aa1.34□□□□□ -2.19
SMCHD1-209ENST00000583441 COL11A1P12107 1806 aaPredicted RBP1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 RGS12O14924 1447 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 IGKV2-29A2NJV5 120 aaPredicted RBP1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 TRAPPC13A5PLN9 417 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 SDCBPO00560 298 aaPredicted RBP1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 TTRP02766 147 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 PRB1P04280 392 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 DEFA4P12838 97 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 RPS4Y1P22090 263 aaKnown RBP1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 ANP32AP39687 249 aaKnown RBP1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 CDKN2CP42773 168 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 ZNF80P51504 273 aaPredicted RBP1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 SPANXN3Q5MJ09 141 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 ANKRD29Q8N6D5 301 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 TMEM106AQ96A25 262 aa1.33□□□□□ -2.2
SMCHD1-209ENST00000583441 PPP1R2P1Q96PQ5 205 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms