RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 CCDC144NLQ6NUI1 221 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 CIARTQ8N365 385 aaPredicted RBP7.53□□□□□ -1.2
SS18-220ENST00000582092 EIF4E3Q8N5X7 224 aaKnown RBP7.53□□□□□ -1.2
SS18-220ENST00000582092 TEX45Q8NA69 505 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 SLC24A4Q8NFF2 622 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 TAF15Q92804 592 aaKnown RBP eCLIP7.53□□□□□ -1.2
SS18-220ENST00000582092 ST6GALNAC6Q969X2 333 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 RNF5Q99942 180 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 PSMG3Q9BT73 122 aaPredicted RBP7.53□□□□□ -1.2
SS18-220ENST00000582092 GGACTQ9BVM4 153 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 PARD6GQ9BYG4 376 aaPredicted RBP7.53□□□□□ -1.2
SS18-220ENST00000582092 WDR61Q9GZS3 305 aaKnown RBP7.53□□□□□ -1.2
SS18-220ENST00000582092 EIF5A2Q9GZV4 153 aaKnown RBP7.53□□□□□ -1.2
SS18-220ENST00000582092 SH3BGRL3Q9H299 93 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 SIRT7Q9NRC8 400 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 TMEM14BQ9NUH8 114 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 CSPG4Q6UVK1 2322 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 DOCK11Q5JSL3 2073 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 IGHV3-72A0A0B4J1Y9 119 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 TEX50A0A1B0GTY4 177 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 BTBD17A6NE02 478 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 AGPAT2O15120 278 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 SOX15O60248 233 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 TOX4O94842 621 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 OPN1MWP04001 364 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 OPN1MW2P0DN77 364 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 OPN1MW3P0DN78 364 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 ZP3P21754 424 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 CD1BP29016 333 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 MAS1LP35410 378 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 DLK1P80370 383 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 PRCDQ00LT1 54 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 RUNX1Q01196 453 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 HES1Q14469 280 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 AARDQ4LEZ3 155 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 PDLIM3Q53GG5 364 aaPredicted RBP7.52□□□□□ -1.21
SS18-220ENST00000582092 TPTE2P1Q5T6R2 138 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 Q71RC1 249 aaPredicted RBP7.52□□□□□ -1.21
SS18-220ENST00000582092 CCDC28AQ8IWP9 274 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 MMD2Q8IY49 270 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 PUSL1Q8N0Z8 303 aaKnown RBP7.52□□□□□ -1.21
SS18-220ENST00000582092 C11orf42Q8N5U0 333 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 OR11H6Q8NGC7 330 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 CLDND2Q8NHS1 167 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 TMEM167AQ8TBQ9 72 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 SFT2D1Q8WV19 159 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 RBMXL1Q96E39 390 aaKnown RBP7.52□□□□□ -1.21
SS18-220ENST00000582092 SMR3AQ99954 134 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 BPESC1Q9GZL8 116 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 KCNIP2Q9NS61 270 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 SLC39A9Q9NUM3 307 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 KIAA1456Q9P272 454 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 TIMM9Q9Y5J7 89 aa7.52□□□□□ -1.21
SS18-220ENST00000582092 A0A1W2PRD5 423 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 A0A1W2PRF3 423 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 A0A1W2PRM7 423 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 A8MXK9 166 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 CYB5BO43169 146 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 SLC25A17O43808 307 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 MPDU1O75352 247 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 TSPAN9O75954 239 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 IGLV1-47P01700 117 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 VDAC2P45880 294 aaPredicted RBP7.51□□□□□ -1.21
SS18-220ENST00000582092 AKR1C1Q04828 323 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 LOXL1Q08397 574 aaPredicted RBP7.51□□□□□ -1.21
SS18-220ENST00000582092 ARL16Q0P5N6 197 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 DIAPH2-AS1Q14236 149 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 ACOT6Q3I5F7 207 aaPredicted RBP7.51□□□□□ -1.21
SS18-220ENST00000582092 KRTAP21-3Q3LHN1 58 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 TMEM41BQ5BJD5 291 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 MINOS1Q5TGZ0 78 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 BTNL8Q6UX41 500 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 VMO1Q7Z5L0 202 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 BPIFCQ8NFQ6 507 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 C10orf105Q8TEF2 133 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 RSG1Q9BU20 258 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 LPAR2Q9HBW0 351 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 NPVFQ9HCQ7 196 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 HILPDAQ9Y5L2 63 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 MINOS1-NBL1R4GNA1 71 aa7.51□□□□□ -1.21
SS18-220ENST00000582092 TLN2Q9Y4G6 2542 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 IGHV4-30-2A0A087WSY4 118 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 IGHV2-70DA0A0C4DH43 119 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 A0A1B0GV50 99 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 SRRM4A7MD48 611 aaKnown RBP7.5□□□□□ -1.21
SS18-220ENST00000582092 C15orf62A8K5M9 175 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 OOSP1A8MZH6 123 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 F8W036 122 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 RNASEK-C17orf49H0YIS7 233 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 CD5LO43866 347 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 CNIH1O95406 144 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 CA2P00918 260 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 IFNA1P01562 189 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 APOC3P02656 99 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 BRS3P32247 399 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 DVL1P1P54792 670 aaPredicted RBP7.5□□□□□ -1.21
SS18-220ENST00000582092 ELLP55199 621 aaPredicted RBP7.5□□□□□ -1.21
SS18-220ENST00000582092 GNB1P62873 340 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 DEFA5Q01523 94 aa7.5□□□□□ -1.21
SS18-220ENST00000582092 PRB3Q04118 309 aaPredicted RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms