RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 INTS1Q8N201 2190 aaKnown RBP1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 H7C2G1 150 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 CHP2O43745 196 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 CIAO1O76071 339 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 PPBPP02775 128 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 IFNA16P05015 189 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 SRP19P09132 144 aaKnown RBP1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 RAB13P51153 203 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 LSM6P62312 80 aaKnown RBP1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 RANP62826 216 aaKnown RBP1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 HIST3H3Q16695 136 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 TMEM155Q4W5P6 130 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 FAM27BQ5VT28 67 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 AHNAK2Q8IVF2 5795 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 PPP1R2P1Q96PQ5 205 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 XAGE1AQ9HD64 81 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 UBAP1Q9NZ09 502 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 NAT8Q9UHE5 227 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 FUT9Q9Y231 359 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 COL6A6A6NMZ7 2263 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 FLT4P35916 1363 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 MTUS2Q5JR59 1369 aa1.19□□□□□ -2.22
SMCHD1-204ENST00000581226 GLI3P10071 1580 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 TRAV38-1A0A0B4J264 116 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 KLRC4O43908 158 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 IGKV1-5P01602 117 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 CLPSP04118 112 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 ZNF705DP0CH99 300 aaPredicted RBP1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 ZNF705BP0CI00 300 aaPredicted RBP1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 PSMB8P28062 276 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 S100A7P31151 101 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 CSN1S1P47710 185 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 KRTAP10-4P60372 401 aaPredicted RBP1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 TMEM258P61165 79 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 POLR2GP62487 172 aaKnown RBP eCLIP1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 RUNX1Q01196 453 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 LPCAT4Q643R3 524 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 DCXRQ7Z4W1 244 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 RPP25LQ8N5L8 163 aaKnown RBP1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 ZNF565Q8N9K5 539 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 ROPN1LQ96C74 230 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 MRPS26Q9BYN8 205 aaKnown RBP1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 CHST6Q9GZX3 395 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 IL36BQ9NZH7 164 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 PKIGQ9Y2B9 76 aa1.18□□□□□ -2.22
SMCHD1-204ENST00000581226 COL4A5P29400 1685 aa1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 OR51F1A6NGY5 319 aa1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 M0R036 132 aa1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 HIST1H1TP22492 207 aaPredicted RBP1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 SPCS3P61009 180 aa1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 GLO1Q04760 184 aa1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 AKR1C1Q04828 323 aa1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 ACOT6Q3I5F7 207 aaPredicted RBP1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 ZNF705AQ6ZN79 300 aaPredicted RBP1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 KTN1-AS1Q86SY8 53 aa1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 TBC1D19Q8N5T2 526 aa1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 EFCAB1Q9HAE3 211 aa1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 MRPL27Q9P0M9 148 aaKnown RBP1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 RSL24D1Q9UHA3 163 aaKnown RBP1.17□□□□□ -2.22
SMCHD1-204ENST00000581226 TRBV20OR9-2A0A075B6H5 130 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 IBA57-AS1B1ANH7 110 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 KPNA3O00505 521 aaPredicted RBP1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 FAAHO00519 579 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 IGHV3-7P01780 117 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 TCRBP04435 133 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 RPS17P08708 135 aaKnown RBP1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 KCNE1P15382 129 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 RPS20P60866 119 aaKnown RBP1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 AP1S1P61966 158 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 SUPT4H1P63272 117 aaKnown RBP1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 CCL20P78556 96 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 MOGQ16653 247 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 ZNF439Q8NDP4 499 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 OR5B17Q8NGF7 314 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 C10orf105Q8TEF2 133 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 ACOT12Q8WYK0 555 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 IMP4Q96G21 291 aaKnown RBP1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 WDR61Q9GZS3 305 aaKnown RBP1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 UCK1Q9HA47 277 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 C8orf4Q9NR00 106 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 LSM5Q9Y4Y9 91 aaKnown RBP1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 TIMM9Q9Y5J7 89 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 SCN10AQ9Y5Y9 1956 aa1.16□□□□□ -2.22
SMCHD1-204ENST00000581226 MYH7BA7E2Y1 1941 aa1.15□□□□□ -2.22
SMCHD1-204ENST00000581226 A0A087WUJ7 227 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 CLDN24A6NM45 220 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 GOLGA6L19H0YKK7 550 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 C1QAP02745 245 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 PRM2P04554 102 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 SERPINA7P05543 415 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 GPX2P18283 190 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 MSNP26038 577 aaKnown RBP1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 RPL5P46777 297 aaKnown RBP1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 SNRPD2P62316 118 aaKnown RBP1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 CAV1Q03135 178 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 RPL18Q07020 188 aaKnown RBP1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 RGS21Q2M5E4 152 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 HIST2H3PS2Q5TEC6 136 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 GLT8D1Q68CQ7 371 aa1.15□□□□□ -2.23
SMCHD1-204ENST00000581226 TMEM42Q69YG0 159 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 140.5 ms