RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SCGB2B2Q4G0G5 96 aa18.23■□□□□ 0.51
SHMT1-206ENST00000579558 SMIM4Q8WVI0 70 aa18.23■□□□□ 0.51
SHMT1-206ENST00000579558 EEF1AKMT3Q96AZ1 226 aa18.23■□□□□ 0.51
SHMT1-206ENST00000579558 HINT2Q9BX68 163 aa18.23■□□□□ 0.51
SHMT1-206ENST00000579558 RABL2AQ9UBK7 228 aaPredicted RBP18.23■□□□□ 0.51
SHMT1-206ENST00000579558 PEMTQ9UBM1 199 aa18.23■□□□□ 0.51
SHMT1-206ENST00000579558 PRNDQ9UKY0 176 aa18.23■□□□□ 0.51
SHMT1-206ENST00000579558 RABL2BQ9UNT1 228 aa18.23■□□□□ 0.51
SHMT1-206ENST00000579558 OR51B2Q9Y5P1 312 aa18.23■□□□□ 0.51
SHMT1-206ENST00000579558 PTBP1P26599 531 aaKnown RBP eCLIP18.22■□□□□ 0.51
SHMT1-206ENST00000579558 HSD17B13Q7Z5P4 300 aaPredicted RBP18.22■□□□□ 0.51
SHMT1-206ENST00000579558 CCDC140Q96MF4 163 aa18.22■□□□□ 0.51
SHMT1-206ENST00000579558 TSC22D3Q99576 134 aa18.22■□□□□ 0.51
SHMT1-206ENST00000579558 SLIRPQ9GZT3 109 aaKnown RBP18.22■□□□□ 0.51
SHMT1-206ENST00000579558 NDUFA4L2Q9NRX3 87 aa18.22■□□□□ 0.51
SHMT1-206ENST00000579558 SMAD5-AS1Q9Y6J3 95 aa18.22■□□□□ 0.51
SHMT1-206ENST00000579558 CTDSPLO15194 276 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 GGCTO75223 188 aaKnown RBP18.21■□□□□ 0.51
SHMT1-206ENST00000579558 IGKV1-39P01597 117 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 IGKV1D-39P04432 117 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 SERPINE2P07093 398 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 CSN3P07498 182 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 OR13C7P0DN81 318 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 PIGPP57054 158 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 C11orf87Q6NUJ2 197 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 CLEC19AQ6UXS0 136 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 TERB2Q8NHR7 220 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 SEC22AQ96IW7 307 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 FKBP11Q9NYL4 201 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 DMRT1Q9Y5R6 373 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 CEPT1Q9Y6K0 416 aa18.21■□□□□ 0.51
SHMT1-206ENST00000579558 CYB5BO43169 146 aa18.2■□□□□ 0.5
SHMT1-206ENST00000579558 HLA-AP01891 365 aaKnown RBP18.2■□□□□ 0.5
SHMT1-206ENST00000579558 ARL3P36405 182 aa18.2■□□□□ 0.5
SHMT1-206ENST00000579558 WT1-ASQ06250 92 aa18.2■□□□□ 0.5
SHMT1-206ENST00000579558 MEF2DQ14814 521 aa18.2■□□□□ 0.5
SHMT1-206ENST00000579558 H2BFWTQ7Z2G1 175 aa18.2■□□□□ 0.5
SHMT1-206ENST00000579558 GDPD1Q8N9F7 314 aa18.2■□□□□ 0.5
SHMT1-206ENST00000579558 ZFAND1Q8TCF1 268 aa18.2■□□□□ 0.5
SHMT1-206ENST00000579558 LSM10Q969L4 123 aaKnown RBP18.2■□□□□ 0.5
SHMT1-206ENST00000579558 MRGPRFQ96AM1 343 aa18.2■□□□□ 0.5
SHMT1-206ENST00000579558 CXorf58Q96LI9 332 aa18.2■□□□□ 0.5
SHMT1-206ENST00000579558 SIGLEC8Q9NYZ4 499 aa18.2■□□□□ 0.5
SHMT1-206ENST00000579558 THYN1Q9P016 225 aa18.2■□□□□ 0.5
SHMT1-206ENST00000579558 MFSD2BA6NFX1 497 aa18.19■□□□□ 0.5
SHMT1-206ENST00000579558 C15orf61A6NNL5 157 aa18.19■□□□□ 0.5
SHMT1-206ENST00000579558 H0Y980 276 aa18.19■□□□□ 0.5
SHMT1-206ENST00000579558 FAAP20Q6NZ36 180 aa18.19■□□□□ 0.5
SHMT1-206ENST00000579558 OR13C8Q8NGS7 320 aa18.19■□□□□ 0.5
SHMT1-206ENST00000579558 OR5B3Q8NH48 314 aa18.19■□□□□ 0.5
SHMT1-206ENST00000579558 MCFD2Q8NI22 146 aa18.19■□□□□ 0.5
SHMT1-206ENST00000579558 TMEM14BQ9NUH8 114 aa18.19■□□□□ 0.5
SHMT1-206ENST00000579558 COPZ2Q9P299 210 aa18.19■□□□□ 0.5
SHMT1-206ENST00000579558 DNAH9Q9NYC9 4486 aa18.19■□□□□ 0.5
SHMT1-206ENST00000579558 COL7A1Q02388 2944 aa18.18■□□□□ 0.5
SHMT1-206ENST00000579558 TRBV7-1A0A0A6YYK4 115 aa18.18■□□□□ 0.5
SHMT1-206ENST00000579558 CCDC160A6NGH7 325 aa18.18■□□□□ 0.5
SHMT1-206ENST00000579558 DBX1A6NMT0 343 aa18.18■□□□□ 0.5
SHMT1-206ENST00000579558 OR2C1O95371 312 aa18.18■□□□□ 0.5
SHMT1-206ENST00000579558 MECP2P51608 486 aaKnown RBP18.18■□□□□ 0.5
SHMT1-206ENST00000579558 CCDC71LQ8N9Z2 235 aa18.18■□□□□ 0.5
SHMT1-206ENST00000579558 OR4A16Q8NH70 328 aa18.18■□□□□ 0.5
SHMT1-206ENST00000579558 MARCH1Q8TCQ1 289 aa18.18■□□□□ 0.5
SHMT1-206ENST00000579558 TMEM56Q96MV1 263 aa18.18■□□□□ 0.5
SHMT1-206ENST00000579558 TP53RKQ96S44 253 aa18.18■□□□□ 0.5
SHMT1-206ENST00000579558 DISC1C4P0D8 188 aa18.17■□□□□ 0.5
SHMT1-206ENST00000579558 AKAIN1P0CW23 69 aa18.17■□□□□ 0.5
SHMT1-206ENST00000579558 SLC25A24Q6NUK1 477 aa18.17■□□□□ 0.5
SHMT1-206ENST00000579558 NXF2Q9GZY0 626 aaKnown RBP18.17■□□□□ 0.5
SHMT1-206ENST00000579558 RSL24D1Q9UHA3 163 aaKnown RBP18.17■□□□□ 0.5
SHMT1-206ENST00000579558 C3orf85A0A1B0GTC6 90 aa18.16■□□□□ 0.5
SHMT1-206ENST00000579558 NHLRC4P0CG21 123 aaPredicted RBP18.16■□□□□ 0.5
SHMT1-206ENST00000579558 TNFSF8P32971 234 aa18.16■□□□□ 0.5
SHMT1-206ENST00000579558 OR4C16Q8NGL9 310 aa18.16■□□□□ 0.5
SHMT1-206ENST00000579558 ASCL2Q99929 193 aa18.16■□□□□ 0.5
SHMT1-206ENST00000579558 F11RQ9Y624 299 aaKnown RBP18.16■□□□□ 0.5
SHMT1-206ENST00000579558 GSTZ1O43708 216 aaPredicted RBP18.15■□□□□ 0.5
SHMT1-206ENST00000579558 CLEC3BP05452 202 aa18.15■□□□□ 0.5
SHMT1-206ENST00000579558 CTSDP07339 412 aaPredicted RBP18.15■□□□□ 0.5
SHMT1-206ENST00000579558 LCN12Q6JVE5 192 aa18.15■□□□□ 0.5
SHMT1-206ENST00000579558 GPHB5Q86YW7 130 aa18.15■□□□□ 0.5
SHMT1-206ENST00000579558 Q8N402 240 aa18.15■□□□□ 0.5
SHMT1-206ENST00000579558 ZNF502Q8TBZ5 544 aa18.15■□□□□ 0.5
SHMT1-206ENST00000579558 ZC4H2Q9NQZ6 224 aa18.15■□□□□ 0.5
SHMT1-206ENST00000579558 FABP12A6NFH5 140 aa18.14■□□□□ 0.49
SHMT1-206ENST00000579558 LGALS9O00182 355 aa18.14■□□□□ 0.49
SHMT1-206ENST00000579558 GPR183P32249 361 aa18.14■□□□□ 0.49
SHMT1-206ENST00000579558 TRIM16LQ309B1 348 aa18.14■□□□□ 0.49
SHMT1-206ENST00000579558 FAM106AQ4KMX7 169 aa18.14■□□□□ 0.49
SHMT1-206ENST00000579558 VN1R17PQ8TDU5 208 aa18.14■□□□□ 0.49
SHMT1-206ENST00000579558 C14orf166Q9Y224 244 aaKnown RBP18.14■□□□□ 0.49
SHMT1-206ENST00000579558 ANKRD20A5PA0PJZ0 165 aa18.13■□□□□ 0.49
SHMT1-206ENST00000579558 C2orf70A6NJV1 201 aa18.13■□□□□ 0.49
SHMT1-206ENST00000579558 ATG12O94817 140 aa18.13■□□□□ 0.49
SHMT1-206ENST00000579558 IGKV1-5P01602 117 aa18.13■□□□□ 0.49
SHMT1-206ENST00000579558 AKR1C2P52895 323 aa18.13■□□□□ 0.49
SHMT1-206ENST00000579558 MFAP2P55001 183 aa18.13■□□□□ 0.49
SHMT1-206ENST00000579558 IZUMO4Q1ZYL8 232 aa18.13■□□□□ 0.49
SHMT1-206ENST00000579558 SP6Q3SY56 376 aa18.13■□□□□ 0.49
SHMT1-206ENST00000579558 ADAMTSL5Q6ZMM2 481 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms