RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 UTF1Q5T230 341 aa8.17□□□□□ -1.1
SS18-210ENST00000578700 PNKDQ8N490 385 aa8.17□□□□□ -1.1
SS18-210ENST00000578700 TMEM252Q8N6L7 170 aa8.17□□□□□ -1.1
SS18-210ENST00000578700 OR5AN1Q8NGI8 311 aa8.17□□□□□ -1.1
SS18-210ENST00000578700 OR52E5Q8NH55 327 aa8.17□□□□□ -1.1
SS18-210ENST00000578700 DTD1Q8TEA8 209 aa8.17□□□□□ -1.1
SS18-210ENST00000578700 RPEQ96AT9 228 aa8.17□□□□□ -1.1
SS18-210ENST00000578700 HARBI1Q96MB7 349 aa8.17□□□□□ -1.1
SS18-210ENST00000578700 STRAPQ9Y3F4 350 aaKnown RBP8.17□□□□□ -1.1
SS18-210ENST00000578700 H0YJW9 148 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 ARG1P05089 322 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 FGF2P09038 288 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 S100A1P23297 94 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 LGALS7P47929 136 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 REG1BP48304 166 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 HOXA1P49639 335 aaPredicted RBP8.16□□□□□ -1.1
SS18-210ENST00000578700 LGALS4P56470 323 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 OR2B8PP59922 312 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 NHLH2Q02577 135 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 PAX2Q02962 417 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 POU2AF1Q16633 256 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 VMA21Q3ZAQ7 101 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 TMEM177Q53S58 311 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 SPANXN5Q5MJ07 72 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 RPL7L1Q6DKI1 246 aaKnown RBP8.16□□□□□ -1.1
SS18-210ENST00000578700 OR4A47Q6IF82 309 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 MOB3BQ86TA1 216 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 ZNF429Q86V71 674 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 LILRB2Q8N423 598 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 C11orf42Q8N5U0 333 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 UBAC2Q8NBM4 344 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 OR11H6Q8NGC7 330 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 OR5C1Q8NGR4 320 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 OR4A5Q8NH83 315 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 LINC01006Q8NI28 216 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 SCGB1C1Q8TD33 95 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 RNF141Q8WVD5 230 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 NABP2Q9BQ15 211 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 QTRT1Q9BXR0 403 aaKnown RBP8.16□□□□□ -1.1
SS18-210ENST00000578700 C11orf1Q9H5F2 150 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 HEYLQ9NQ87 328 aaPredicted RBP8.16□□□□□ -1.1
SS18-210ENST00000578700 CYTL1Q9NRR1 136 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 PFDN2Q9UHV9 154 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 COL7A1Q02388 2944 aa8.16□□□□□ -1.1
SS18-210ENST00000578700 IGSF23A1L1A6 192 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 C15orf61A6NNL5 157 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 G3V4G9 280 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 H3BP45 60 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 CST7O76096 145 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 IGLV1-47P01700 117 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 OR9G9P0C7N8 305 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 DYNLT3P51808 116 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 CLINT1Q14677 625 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 ATP6V1FQ16864 119 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 AARDQ4LEZ3 155 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 CCDC144NLQ6NUI1 221 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 MRPL41Q8IXM3 137 aaKnown RBP8.15□□□□□ -1.1
SS18-210ENST00000578700 VKORC1L1Q8N0U8 176 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 TMEM217Q8N7C4 229 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 ST6GALNAC6Q969X2 333 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 PINX1Q96BK5 328 aaKnown RBP8.15□□□□□ -1.1
SS18-210ENST00000578700 GNPNAT1Q96EK6 184 aaPredicted RBP8.15□□□□□ -1.1
SS18-210ENST00000578700 ATP5SQ99766 215 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 COMMD5Q9GZQ3 224 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 SIRT7Q9NRC8 400 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 BET1LQ9NYM9 111 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 ZNRD1Q9P1U0 126 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 DPM3Q9P2X0 92 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 FOXA2Q9Y261 457 aaPredicted RBP8.15□□□□□ -1.1
SS18-210ENST00000578700 ZNF257Q9Y2Q1 563 aa8.15□□□□□ -1.1
SS18-210ENST00000578700 RYR3Q15413 4870 aa8.15□□□□□ -1.11
SS18-210ENST00000578700 OOSP1A8MZH6 123 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 UPK2O00526 184 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 KBTBD11O94819 623 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 TOX4O94842 621 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 TMEM50AO95807 157 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 IFNA10P01566 189 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 IGKV1-16P04430 117 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 OR8U8P0C7N1 319 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 SEC11BP0C7V7 166 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 PAX9P55771 341 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 HSPE1P61604 102 aaKnown RBP8.14□□□□□ -1.11
SS18-210ENST00000578700 RAB11AP62491 216 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 TMEM267Q0VDI3 215 aaPredicted RBP8.14□□□□□ -1.11
SS18-210ENST00000578700 VMO1Q7Z5L0 202 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 SLC7A5P1Q8MH63 180 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 Q8N7P7 452 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 OR10P1Q8NGE3 313 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 OR5B3Q8NH48 314 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 TMED6Q8WW62 240 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 SSMEM1Q8WWF3 244 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 HINT2Q9BX68 163 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 PRDM13Q9H4Q3 707 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 PLEKHA3Q9HB20 300 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 OR51B2Q9Y5P1 312 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 KIAA2026Q5HYC2 2103 aa8.14□□□□□ -1.11
SS18-210ENST00000578700 IGHV1-3A0A0C4DH29 117 aa8.13□□□□□ -1.11
SS18-210ENST00000578700 CENPVL3A0A0U1RRI6 287 aa8.13□□□□□ -1.11
SS18-210ENST00000578700 LINC00862A6NCI5 91 aa8.13□□□□□ -1.11
SS18-210ENST00000578700 PLXNB1O43157 2135 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms