RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SLC25A10Q9UBX3 287 aaPredicted RBP8.25□□□□□ -1.09
VPS53-220ENST00000576149 PRNDQ9UKY0 176 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 OR51B2Q9Y5P1 312 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 TANC2Q9HCD6 1990 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 DYSFO75923 2080 aa8.25□□□□□ -1.09
VPS53-220ENST00000576149 BSNQ9UPA5 3926 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 PFN1P07737 140 aaKnown RBP8.24□□□□□ -1.09
VPS53-220ENST00000576149 CDX1P47902 265 aaPredicted RBP8.24□□□□□ -1.09
VPS53-220ENST00000576149 GAL3ST2Q9H3Q3 398 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 KCNIP2Q9NS61 270 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 ZNRD1Q9P1U0 126 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 ZNF257Q9Y2Q1 563 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 MGAQ8IWI9 3026 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 AKAP13Q12802 2813 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 UPK2O00526 184 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 PHOX2AO14813 284 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 PDE6DO43924 150 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 VENTXO95231 258 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 CA2P00918 260 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 IGKV1-16P04430 117 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 STAG3L2P0CL84 134 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 MYOD1P15172 320 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 CDKN1BP46527 198 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 RPL31P62899 125 aaKnown RBP8.24□□□□□ -1.09
VPS53-220ENST00000576149 RTL8BQ17RB0 113 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 TEPPQ6URK8 271 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 ZNF833PQ6ZTB9 187 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 ABHD5Q8WTS1 349 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 PYGO2Q9BRQ0 406 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 SAP30LQ9HAJ7 183 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 PLCE1Q9P212 2302 aa8.24□□□□□ -1.09
VPS53-220ENST00000576149 RIF1Q5UIP0 2472 aaKnown RBP8.24□□□□□ -1.09
VPS53-220ENST00000576149 PPIAL4EA0A075B759 164 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 IFITM10A6NMD0 228 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 SRRM4A7MD48 611 aaKnown RBP8.23□□□□□ -1.09
VPS53-220ENST00000576149 PPIAL4DF5H284 164 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 TMEM178BH3BS89 294 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 J3QR06 171 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 FCN3O75636 299 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 PPIAL4FP0DN26 164 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 ATP5G3P48201 142 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 GNB1P62873 340 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 PRCDQ00LT1 54 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 SPNS3Q6ZMD2 512 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 OR51G1Q8NGK1 321 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 FRZBQ92765 325 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 PPIAL4AQ9Y536 164 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 ZFHX2Q9C0A1 2572 aaPredicted RBP8.23□□□□□ -1.09
VPS53-220ENST00000576149 NBEAQ8NFP9 2946 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 ICE1Q9Y2F5 2266 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 FNDC10F2Z333 226 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 H7BYZ3 331 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 CXorf1O96002 111 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 TRGC1P0CF51 173 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 ARL14EPLP0DKL9 152 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 UBE2G2P60604 165 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 SPACA3Q8IXA5 215 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 SSMEM1Q8WWF3 244 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 NEUROG1Q92886 237 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 ZNF714Q96N38 554 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 TXNDC17Q9BRA2 123 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 HINT2Q9BX68 163 aa8.23□□□□□ -1.09
VPS53-220ENST00000576149 F6UZH7 168 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 TNFRSF13BO14836 293 aaPredicted RBP8.22□□□□□ -1.09
VPS53-220ENST00000576149 CCL3L1P16619 93 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 RPL29P47914 159 aaKnown RBP8.22□□□□□ -1.09
VPS53-220ENST00000576149 RAB31Q13636 194 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 TBR1Q16650 682 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 CST9LP1Q5W188 147 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 TMEM200BQ69YZ2 307 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 STPG3Q8N7X2 389 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 SRD5A3Q9H8P0 318 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 PLEKHA3Q9HB20 300 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 NIT2Q9NQR4 276 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 BET1LQ9NYM9 111 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 TEX50A0A1B0GTY4 177 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 S100PP25815 95 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 GALR1P47211 349 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 CCL17Q92583 94 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 RND1Q92730 232 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 WFIKKN1Q96NZ8 548 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 OR5B12Q96R08 314 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 FKBP11Q9NYL4 201 aa8.22□□□□□ -1.09
VPS53-220ENST00000576149 NDUFB4O95168 129 aa8.21□□□□□ -1.09
VPS53-220ENST00000576149 SAA1P0DJI8 122 aaPredicted RBP8.21□□□□□ -1.09
VPS53-220ENST00000576149 ATP5IP56385 69 aaPredicted RBP8.21□□□□□ -1.09
VPS53-220ENST00000576149 PRR20EP86478 221 aa8.21□□□□□ -1.09
VPS53-220ENST00000576149 PRR20CP86479 221 aa8.21□□□□□ -1.09
VPS53-220ENST00000576149 PRR20DP86480 221 aa8.21□□□□□ -1.09
VPS53-220ENST00000576149 PRR20BP86481 221 aa8.21□□□□□ -1.09
VPS53-220ENST00000576149 PRR20AP86496 221 aa8.21□□□□□ -1.09
VPS53-220ENST00000576149 EFNB3Q15768 340 aa8.21□□□□□ -1.09
VPS53-220ENST00000576149 PRR30Q53SZ7 412 aaPredicted RBP8.21□□□□□ -1.09
VPS53-220ENST00000576149 ASCL5Q7RTU5 278 aa8.21□□□□□ -1.09
VPS53-220ENST00000576149 LINC01551Q86U37 167 aa8.21□□□□□ -1.09
VPS53-220ENST00000576149 NECAP1Q8NC96 275 aa8.21□□□□□ -1.09
VPS53-220ENST00000576149 OSR1Q8TAX0 266 aaPredicted RBP8.21□□□□□ -1.09
VPS53-220ENST00000576149 RNASE6Q93091 150 aaKnown RBP8.21□□□□□ -1.09
VPS53-220ENST00000576149 CITED2Q99967 270 aaPredicted RBP8.21□□□□□ -1.09
VPS53-220ENST00000576149 MRPL20Q9BYC9 149 aaKnown RBP8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms