RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 A0A0B4J2A0 478 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 C13orf42A0A1B0GVH6 325 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 HMX3A6NHT5 357 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 FAM223BA6NKX1 122 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 E7EUB6 86 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 UPK1BO75841 260 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 TSPAN15O95858 294 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 IGKV1-5P01602 117 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 LGALS1P09382 135 aaKnown RBP7.44□□□□□ -1.22
CCDC40-214ENST00000575431 P0C879 139 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 DEFA4P12838 97 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 CTRB1P17538 263 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 SUPT4H1P63272 117 aaKnown RBP7.44□□□□□ -1.22
CCDC40-214ENST00000575431 ASAH1Q13510 395 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 KIAA0141Q14154 515 aaPredicted RBP7.44□□□□□ -1.22
CCDC40-214ENST00000575431 TMEM187Q14656 261 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 KLK9Q2XQG4 91 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 CTRB2Q6GPI1 263 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 C8orf86Q6ZUL3 223 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 FAM223AQ8IWN6 122 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 LRTM2Q8N967 370 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 NECAP1Q8NC96 275 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 MS4A10Q96PG2 267 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 ALX4Q9H161 411 aaPredicted RBP7.44□□□□□ -1.22
CCDC40-214ENST00000575431 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.44□□□□□ -1.22
CCDC40-214ENST00000575431 SHPKQ9UHJ6 478 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 KLK9Q9UKQ9 250 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 NSG2Q9Y328 171 aa7.44□□□□□ -1.22
CCDC40-214ENST00000575431 PLXNB1O43157 2135 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 TRBV9A0A0B4J1U6 114 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 IGLC7A0M8Q6 106 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 CGB1A6NKQ9 187 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 INS-IGF2F8WCM5 200 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 I3L521 148 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 CCL24O00175 119 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 SFT2D2O95562 160 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 DUS4LO95620 317 aaKnown RBP7.43□□□□□ -1.22
CCDC40-214ENST00000575431 TCRBP04435 133 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 OR8U8P0C7N1 319 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 APELAP0DMC3 54 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 BTCP35070 178 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 MECP2P51608 486 aaKnown RBP7.43□□□□□ -1.22
CCDC40-214ENST00000575431 DEFA1P59665 94 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 DEFA3P59666 94 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 ERHP84090 104 aaKnown RBP7.43□□□□□ -1.22
CCDC40-214ENST00000575431 PRCDQ00LT1 54 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 AARDQ4LEZ3 155 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 LCNL1Q6ZST4 164 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 SLC35G3Q8N808 338 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 WFDC9Q8NEX5 89 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 OR52E5Q8NH55 327 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 LHFPL5Q8TAF8 219 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 DPF1Q92782 380 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 P2RX4Q99571 388 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 HINT2Q9BX68 163 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 STAB1Q9NY15 2570 aa7.43□□□□□ -1.22
CCDC40-214ENST00000575431 TNCP24821 2201 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 A0A0B4J293 547 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 FAM240BA0A1B0GVZ2 78 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 A0A1B0GW64 132 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 IFNA17P01571 189 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 HSPB1P04792 205 aaKnown RBP7.42□□□□□ -1.22
CCDC40-214ENST00000575431 OR13C7P0DN81 318 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 MYOD1P15172 320 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 AREGP15514 252 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 SPCS3P61009 180 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 RHOGP84095 191 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 ATP5G2Q06055 141 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 ZNF616Q08AN1 781 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 PPP1R1AQ13522 171 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 OR11H1Q8NG94 326 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 OR1N2Q8NGR9 330 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 COQ8AQ8NI60 647 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 CXorf58Q96LI9 332 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 MCRIP2Q9BUT9 160 aaKnown RBP7.42□□□□□ -1.22
CCDC40-214ENST00000575431 GPR61Q9BZJ8 451 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 C20orf85Q9H1P6 137 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 PLEKHA3Q9HB20 300 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 RANGRFQ9HD47 186 aaPredicted RBP7.42□□□□□ -1.22
CCDC40-214ENST00000575431 ENY2Q9NPA8 101 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 TMED3Q9Y3Q3 217 aa7.42□□□□□ -1.22
CCDC40-214ENST00000575431 IGLV11-55A0A075B6I3 123 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 A0A1B0GU03 582 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 C9orf170A2RU37 121 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 DBX1A6NMT0 343 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 CORTO00230 105 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 ST8SIA3O43173 380 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 HLA-AP01891 365 aaKnown RBP7.41□□□□□ -1.22
CCDC40-214ENST00000575431 OR4E1P0C645 316 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 SULT1A3P0DMM9 295 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 SULT1A4P0DMN0 295 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 SLC25A6P12236 298 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 CD33P20138 364 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 ZP3P21754 424 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 SNCAP37840 140 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 SUB1P53999 127 aaKnown RBP eCLIP7.41□□□□□ -1.22
CCDC40-214ENST00000575431 WT1-ASQ06250 92 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 FHL3Q13643 280 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 C4orf46Q504U0 113 aa7.41□□□□□ -1.22
CCDC40-214ENST00000575431 PDLIM3Q53GG5 364 aaPredicted RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms