RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 GPR82Q96P67 336 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 TMEM147Q9BVK8 224 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 YIPF3Q9GZM5 350 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 NOX3Q9HBY0 568 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 ZNF331Q9NQX6 463 aaPredicted RBP2.47□□□□□ -2.01
NUP88-209ENST00000574855 GNG8Q9UK08 70 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 POMPQ9Y244 141 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 INSIG2Q9Y5U4 225 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 F11RQ9Y624 299 aaKnown RBP2.47□□□□□ -2.01
NUP88-209ENST00000574855 PXMP4Q9Y6I8 212 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 U3KQ87 197 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 ANK1P16157 1881 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 RALGAPA2Q2PPJ7 1873 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 PLXNA1Q9UIW2 1896 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 ZSWIM8A7E2V4 1837 aa2.47□□□□□ -2.01
NUP88-209ENST00000574855 SCN1AP35498 2009 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 PCM1Q15154 2024 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 IGLV4-3A0A075B6K6 122 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 IGHV2-26A0A0B4J1V2 119 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 IGHV7-81A0A0B4J1V7 117 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 SMIM31A0A1B0GVY4 71 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 CIB4A0PJX0 185 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 NKX2-6A6NCS4 301 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 RPL37AP8A6NKH3 93 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 A8MT66 165 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 ISLRO14498 428 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 TP53I11O14683 189 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 MRASO14807 208 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 TCF21O43680 179 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 SS18L1O75177 396 aaPredicted RBP2.46□□□□□ -2.02
NUP88-209ENST00000574855 NDUFC2O95298 119 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 DBIP07108 87 aaKnown RBP2.46□□□□□ -2.02
NUP88-209ENST00000574855 IGHV3-43DP0DP04 118 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 ORM2P19652 201 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 CNTFRP26992 372 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 POLR2IP36954 125 aaKnown RBP2.46□□□□□ -2.02
NUP88-209ENST00000574855 MDH2P40926 338 aaKnown RBP2.46□□□□□ -2.02
NUP88-209ENST00000574855 RPL35P42766 123 aaKnown RBP2.46□□□□□ -2.02
NUP88-209ENST00000574855 SYNJ2BPP57105 145 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 DEFA3P59666 94 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 TNFAIP6P98066 277 aaPredicted RBP2.46□□□□□ -2.02
NUP88-209ENST00000574855 PLCXD2Q0VAA5 305 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 ERCC8Q13216 396 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 IBA57Q5T440 356 aaKnown RBP2.46□□□□□ -2.02
NUP88-209ENST00000574855 PLET1Q6UQ28 207 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 SCIMPQ6UWF3 145 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 SBSNQ6UWP8 590 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 IZUMO2Q6UXV1 221 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 ACP7Q6ZNF0 438 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 ZNF493Q6ZR52 646 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 ANKRD29Q8N6D5 301 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 ZNF283Q8N7M2 679 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 TMEM75Q8N9X5 138 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 DCAF4L2Q8NA75 395 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 LY6G5BQ8NDX9 201 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 TSTD1Q8NFU3 115 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 OR2G3Q8NGZ4 309 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 OR1L1Q8NH94 360 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 OR5K1Q8NHB7 308 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 GPR146Q96CH1 333 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 RPUSD4Q96CM3 377 aaKnown RBP2.46□□□□□ -2.02
NUP88-209ENST00000574855 STARD4Q96DR4 205 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 KCNS1Q96KK3 526 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 PPP3R2Q96LZ3 170 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 CNBD2Q96M20 576 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 IP6K3Q96PC2 410 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 TSPAN32Q96QS1 320 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 OR7D2Q96RA2 312 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 TRIB3Q96RU7 358 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 CHST6Q9GZX3 395 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 PDFQ9HBH1 243 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 CCL28Q9NRJ3 127 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 AIG1Q9NVV5 245 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 MED11Q9P086 117 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 CCDC167Q9P0B6 97 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 SLC23A2Q9UGH3 650 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 KLF13Q9Y2Y9 288 aaPredicted RBP2.46□□□□□ -2.02
NUP88-209ENST00000574855 FIS1Q9Y3D6 152 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 AP4S1Q9Y587 144 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 HEBP2Q9Y5Z4 205 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 ENPP4Q9Y6X5 453 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 MCM3APO60318 1980 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 TRIP11Q15643 1979 aa2.46□□□□□ -2.02
NUP88-209ENST00000574855 RAI1Q7Z5J4 1906 aaPredicted RBP2.46□□□□□ -2.02
NUP88-209ENST00000574855 NUP210Q8TEM1 1887 aaPredicted RBP2.45□□□□□ -2.02
NUP88-209ENST00000574855 A0A087WUU8 490 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 TRAV19A0A0A6YYK7 116 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 IGHV3-16A0A0C4DH30 117 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 A0A1W2PP18 115 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 K7EPK0 472 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 SLC22A1O15245 554 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 GNG7O60262 68 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 TBL1XO60907 577 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 ZNF682O95780 498 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 IGHV3-48P01763 117 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 HLA-DRB1P01911 266 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 TSPAN19P0C672 248 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 NPY1RP25929 384 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 SRIP30626 198 aa2.45□□□□□ -2.02
NUP88-209ENST00000574855 EVX1P49640 407 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms