RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TBC1D26Q86UD7 250 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 ARRDC1Q8N5I2 433 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 OR9G4Q8NGQ1 327 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 OR52I2Q8NH67 350 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 EEF1AKMT3Q96AZ1 226 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 TSC22D3Q99576 134 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 SRSF8Q9BRL6 282 aaKnown RBP6.22□□□□□ -1.41
VPS53-214ENST00000572607 QTRT1Q9BXR0 403 aaKnown RBP6.22□□□□□ -1.41
VPS53-214ENST00000572607 C6orf62Q9GZU0 229 aaPredicted RBP6.22□□□□□ -1.41
VPS53-214ENST00000572607 CCDC59Q9P031 241 aaKnown RBP6.22□□□□□ -1.41
VPS53-214ENST00000572607 FBXL7Q9UJT9 491 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 LYSTQ99698 3801 aa6.22□□□□□ -1.41
VPS53-214ENST00000572607 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.21□□□□□ -1.42
VPS53-214ENST00000572607 CCDC160A6NGH7 325 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 H0Y980 276 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 GABARAPH6UMI1 98 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 ATG12O94817 140 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 KRASP01116 189 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 REG1AP05451 166 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 SERPINE2P07093 398 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 CRYGCP07315 174 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 TRAPPC2P0DI81 140 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 TRAPPC2BP0DI82 140 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 AREGP15514 252 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 CTRB1P17538 263 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 MECP2P51608 486 aaKnown RBP6.21□□□□□ -1.42
VPS53-214ENST00000572607 SYNJ2BPP57105 145 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 OR2B8PP59922 312 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 ZNF45Q02386 682 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 SSBP1Q04837 148 aaKnown RBP6.21□□□□□ -1.42
VPS53-214ENST00000572607 CTRB2Q6GPI1 263 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 LAX1Q8IWV1 398 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 CCDC71LQ8N9Z2 235 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 TMEM229BQ8NBD8 167 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 LSM10Q969L4 123 aaKnown RBP6.21□□□□□ -1.42
VPS53-214ENST00000572607 ZNF486Q96H40 463 aaPredicted RBP6.21□□□□□ -1.42
VPS53-214ENST00000572607 DIRAS2Q96HU8 199 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 CXorf58Q96LI9 332 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 FANCD2OSQ96PS1 177 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 ABHD1Q96SE0 405 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 B9D2Q9BPU9 175 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 HINT2Q9BX68 163 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 FAM212BQ9NTI7 297 aaPredicted RBP6.21□□□□□ -1.42
VPS53-214ENST00000572607 FKBP11Q9NYL4 201 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 COPZ2Q9P299 210 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 KLK11Q9UBX7 282 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 MTFP1Q9UDX5 166 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 SMAD5-AS1Q9Y6J3 95 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 DNAH1Q9P2D7 4330 aa6.21□□□□□ -1.42
VPS53-214ENST00000572607 TRAV3A0A0B4J244 114 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 DISC1C4P0D8 188 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 CTDSP2O14595 271 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 GGCTO75223 188 aaKnown RBP6.2□□□□□ -1.42
VPS53-214ENST00000572607 RBMXL2O75526 392 aaKnown RBP6.2□□□□□ -1.42
VPS53-214ENST00000572607 NDUFB8O95169 186 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 RAB3DO95716 219 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 TRBV12-3P01733 135 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 CD3DP04234 171 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 GP9P14770 177 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 MYOD1P15172 320 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 SPNP16150 400 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 G6PCP35575 357 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 ARL3P36405 182 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 PPP5CP53041 499 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 KLF5Q13887 457 aaPredicted RBP6.2□□□□□ -1.42
VPS53-214ENST00000572607 MEF2DQ14814 521 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 SCGB2B2Q4G0G5 96 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 C11orf87Q6NUJ2 197 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 STEAP1BQ6NZ63 245 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 H2BFWTQ7Z2G1 175 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 OR1L8Q8NGR8 309 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 OR5B3Q8NH48 314 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 OR4A16Q8NH70 328 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 ZFAND1Q8TCF1 268 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 DYNC2LI1Q8TCX1 351 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 WDR89Q96FK6 387 aaPredicted RBP6.2□□□□□ -1.42
VPS53-214ENST00000572607 TMEM56Q96MV1 263 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 KRTAP4-2Q9BYR5 136 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 MIXL1Q9H2W2 232 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 RSL24D1Q9UHA3 163 aaKnown RBP6.2□□□□□ -1.42
VPS53-214ENST00000572607 PRNDQ9UKY0 176 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 OR51B2Q9Y5P1 312 aa6.2□□□□□ -1.42
VPS53-214ENST00000572607 IGLV11-55A0A075B6I3 123 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 TRBV7-1A0A0A6YYK4 115 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 TEX50A0A1B0GTY4 177 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 IGLC7A0M8Q6 106 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 E7EUB6 86 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 BMPR1BO00238 502 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 IGLV1-51P01701 117 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 NHLRC4P0CG21 123 aaPredicted RBP6.19□□□□□ -1.42
VPS53-214ENST00000572607 OR13C7P0DN81 318 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 AKR1C2P52895 323 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 PIGPP57054 158 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 RND3P61587 244 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 ID3Q02535 119 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 TRIM16LQ309B1 348 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 ZNF585BQ52M93 769 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 LCN12Q6JVE5 192 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 C19orf35Q6ZS72 473 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 HAPLN4Q86UW8 402 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms