RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ANK3Q12955 4377 aaKnown RBP4.76□□□□□ -1.65
VPS53-212ENST00000572259 IGHV4OR15-8A0A075B7B6 117 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 C5orf63A6NC05 138 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 A8MXK9 166 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 ANKRD65E5RJM6 399 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 J3QLW9 94 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 CYB5AP00167 134 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 TTRP02766 147 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 ZNF19P17023 458 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 MYL12AP19105 171 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 PMELP40967 661 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 RORCP51449 518 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 RPL19P84098 196 aaKnown RBP4.75□□□□□ -1.65
VPS53-212ENST00000572259 LRRC10Q5BKY1 277 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 ZNF771Q7L3S4 317 aaPredicted RBP4.75□□□□□ -1.65
VPS53-212ENST00000572259 NIT1Q86X76 327 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 RFLNBQ8N5W9 214 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 PIFOQ8TCI5 191 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 ZNF418Q8TF45 676 aaPredicted RBP4.75□□□□□ -1.65
VPS53-212ENST00000572259 LRRC29Q8WV35 223 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 TMEM158Q8WZ71 300 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 OR5P3Q8WZ94 311 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 C11orf52Q96A22 123 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 RARRES2Q99969 163 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 RHOFQ9HBH0 211 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 RASL12Q9NYN1 266 aa4.75□□□□□ -1.65
VPS53-212ENST00000572259 A0A1B0GV72 72 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 ZNF705EA8MWA4 302 aaPredicted RBP4.74□□□□□ -1.65
VPS53-212ENST00000572259 GABRPO00591 440 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 NDUFB3O43676 98 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 TCF21O43680 179 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 SRSF10O75494 262 aaKnown RBP4.74□□□□□ -1.65
VPS53-212ENST00000572259 SLC22A5O76082 557 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 LHBP01229 141 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 IGLV3-1P01715 115 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 GYPAP02724 150 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 CD74P04233 296 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 CD5P06127 495 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 CCL1P22362 96 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 GPX4P36969 197 aaPredicted RBP4.74□□□□□ -1.65
VPS53-212ENST00000572259 RAB7AP51149 207 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 ERVK-16P61578 105 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 TNFRSF9Q07011 255 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 CLINT1Q14677 625 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 FAM201AQ5SY85 155 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 TEX36Q5VZQ5 186 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 TRIQKQ629K1 86 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 SPSB3Q6PJ21 355 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 ZNF826PQ6ZT77 177 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 S100A7AQ86SG5 101 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 C8orf59Q8N0T1 100 aaPredicted RBP4.74□□□□□ -1.65
VPS53-212ENST00000572259 ZNF676Q8N7Q3 588 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 ZNRF1Q8ND25 227 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 OR5AP2Q8NGF4 316 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 OR10R2Q8NGX6 335 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 SECTM1Q8WVN6 248 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 PP6455Q8WZ26 134 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 ARPC1AQ92747 370 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 FGGYQ96C11 551 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 CPNE2Q96FN4 548 aaPredicted RBP4.74□□□□□ -1.65
VPS53-212ENST00000572259 C9orf85Q96MD7 179 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 METTL17Q9H7H0 456 aaPredicted RBP4.74□□□□□ -1.65
VPS53-212ENST00000572259 AMBNQ9NP70 447 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 KAAG1Q9UBP8 84 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 HHLA2Q9UM44 414 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 TP53TG1Q9Y2A0 90 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 INSIG2Q9Y5U4 225 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 V9GYS6 101 aa4.74□□□□□ -1.65
VPS53-212ENST00000572259 A0A1W2PS18 150 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 EFCAB10A6NFE3 127 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 MSGN1A6NI15 193 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 TMEM212A6NML5 194 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 SRRM5B3KS81 715 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 TRAPPC2LH3BP13 241 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 J3QRE1 110 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 J3QT63 122 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 NUPL2O15504 423 aaKnown RBP4.73□□□□□ -1.65
VPS53-212ENST00000572259 CD2P06729 351 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 PRSS1P07477 247 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 GLP1RP43220 463 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 GABRA2P47869 451 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 RBP2P50120 134 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 UBE2E1P51965 193 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 ELF3P78545 371 aaPredicted RBP4.73□□□□□ -1.65
VPS53-212ENST00000572259 PAX8Q06710 450 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 SMIM21Q3B7S5 101 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 NSUN5P1Q3KNT7 163 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 CCDC58Q4VC31 144 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 WDR38Q5JTN6 314 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 MUC21Q5SSG8 566 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 TMEM42Q69YG0 159 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 HAGHLQ6PII5 290 aaPredicted RBP4.73□□□□□ -1.65
VPS53-212ENST00000572259 FAM19A5Q7Z5A7 132 aaPredicted RBP4.73□□□□□ -1.65
VPS53-212ENST00000572259 C11orf53Q8IXP5 236 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 MKXQ8IYA7 352 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 Q8IYB0 196 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 HSD17B11Q8NBQ5 300 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 OR5D14Q8NGL3 314 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 OR10X1Q8NGY0 326 aa4.73□□□□□ -1.65
VPS53-212ENST00000572259 OR5AK2Q8NH90 309 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms