RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 REG1BP48304 166 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 OR13A1Q8NGR1 328 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 FLYWCH2Q96CP2 140 aaKnown RBP9.56□□□□□ -0.88
CLN3-238ENST00000569430 OR2V2Q96R30 315 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 CRIM1Q9NZV1 1036 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 NUPR1O60356 82 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 NUDT3O95989 172 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 ARL3P36405 182 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 PMCHL1Q16048 86 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 ACSF3Q4G176 576 aaPredicted RBP9.56□□□□□ -0.88
CLN3-238ENST00000569430 FAM162BQ5T6X4 162 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 SPATA31B1PQ5VZV4 182 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 C17orf82Q86X59 251 aaPredicted RBP9.56□□□□□ -0.88
CLN3-238ENST00000569430 OR1B1Q8NGR6 318 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 FAM122AQ96E09 287 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 AGMATQ9BSE5 352 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 SSBP4Q9BWG4 385 aaPredicted RBP9.56□□□□□ -0.88
CLN3-238ENST00000569430 TTTY12Q9BZ98 90 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 OR51B2Q9Y5P1 312 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 ABCA4P78363 2273 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 FBLL1A6NHQ2 334 aaKnown RBP9.56□□□□□ -0.88
CLN3-238ENST00000569430 CELA3BP08861 270 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 RPL24P83731 157 aaKnown RBP9.56□□□□□ -0.88
CLN3-238ENST00000569430 FOXL1Q12952 345 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 DCAF10Q5QP82 559 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 MRPL14Q6P1L8 145 aaKnown RBP9.56□□□□□ -0.88
CLN3-238ENST00000569430 MOGAT3Q86VF5 341 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 WDR83OSQ9Y284 106 aa9.56□□□□□ -0.88
CLN3-238ENST00000569430 AMY1AP04745 511 aa9.55□□□□□ -0.88
CLN3-238ENST00000569430 SP1P08047 785 aa9.55□□□□□ -0.88
CLN3-238ENST00000569430 OR8B3Q8NGG8 313 aa9.55□□□□□ -0.88
CLN3-238ENST00000569430 BCL2L2Q92843 193 aaPredicted RBP9.55□□□□□ -0.88
CLN3-238ENST00000569430 EAF1Q96JC9 268 aaPredicted RBP9.55□□□□□ -0.88
CLN3-238ENST00000569430 ALKBH7Q9BT30 221 aaPredicted RBP9.55□□□□□ -0.88
CLN3-238ENST00000569430 SAP30LQ9HAJ7 183 aa9.55□□□□□ -0.88
CLN3-238ENST00000569430 ACACAQ13085 2346 aa9.55□□□□□ -0.88
CLN3-238ENST00000569430 RBFOX2O43251 390 aaKnown RBP eCLIP9.55□□□□□ -0.88
CLN3-238ENST00000569430 TRA2AQ13595 282 aaKnown RBP eCLIP9.55□□□□□ -0.88
CLN3-238ENST00000569430 Q6ZWC4 215 aa9.55□□□□□ -0.88
CLN3-238ENST00000569430 TNCP24821 2201 aa9.55□□□□□ -0.88
CLN3-238ENST00000569430 SMPD2O60906 423 aa9.55□□□□□ -0.88
CLN3-238ENST00000569430 CA2P00918 260 aa9.55□□□□□ -0.88
CLN3-238ENST00000569430 HOXA4Q00056 320 aaPredicted RBP9.55□□□□□ -0.88
CLN3-238ENST00000569430 PDPNQ86YL7 162 aa9.55□□□□□ -0.88
CLN3-238ENST00000569430 PMCHL2Q9BQD1 86 aa9.55□□□□□ -0.88
CLN3-238ENST00000569430 SEPSECSQ9HD40 501 aaKnown RBP9.55□□□□□ -0.88
CLN3-238ENST00000569430 CREBBPQ92793 2442 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 PSPNO60542 156 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 LEPROTL1O95214 131 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 P01737 135 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 OR9G9P0C7N8 305 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 LINC00869P0C866 280 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 COL8A1P27658 744 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 SCGB2A2Q13296 93 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 ZNRF1Q8ND25 227 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 OR1L4Q8NGR5 311 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 TMEM45BQ96B21 275 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 ZFP30Q9Y2G7 519 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 AMMECR1Q9Y4X0 333 aaPredicted RBP9.54□□□□□ -0.88
CLN3-238ENST00000569430 HSPE1P61604 102 aaKnown RBP9.54□□□□□ -0.88
CLN3-238ENST00000569430 ZNF497Q6ZNH5 498 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 GGNQ86UU5 652 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 KLF14Q8TD94 323 aaPredicted RBP9.54□□□□□ -0.88
CLN3-238ENST00000569430 NEU1Q99519 415 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 PAXXQ9BUH6 204 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 MAP1LC3CQ9BXW4 147 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 K7ERU9 68 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 ZNF324O75467 553 aaPredicted RBP9.54□□□□□ -0.88
CLN3-238ENST00000569430 IGLV3-1P01715 115 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 HIST1H1EP10412 219 aaKnown RBP9.54□□□□□ -0.88
CLN3-238ENST00000569430 MPV17P39210 176 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 OR8A1Q8NGG7 326 aa9.54□□□□□ -0.88
CLN3-238ENST00000569430 VSTM5A8MXK1 200 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 ISLRO14498 428 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 FOXH1O75593 365 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 CT45A10P0DMU9 189 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 TREML4Q6UXN2 200 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 C19orf35Q6ZS72 473 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 Q6ZVH6 145 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 KCNS1Q96KK3 526 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 PGLYRP4Q96LB8 373 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 BOD1L1Q8NFC6 3051 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 PINLYPA6NC86 204 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 C10orf113Q5VZT2 155 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 MUC22E2RYF6 1773 aaPredicted RBP9.53□□□□□ -0.88
CLN3-238ENST00000569430 RPL8P62917 257 aaKnown RBP9.53□□□□□ -0.88
CLN3-238ENST00000569430 PSG7Q13046 419 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 EFNB3Q15768 340 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 SLC25A34Q6PIV7 304 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 MAFAQ8NHW3 353 aaPredicted RBP9.53□□□□□ -0.88
CLN3-238ENST00000569430 SAP25Q8TEE9 199 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 DNASE2BQ8WZ79 361 aa9.53□□□□□ -0.88
CLN3-238ENST00000569430 TRBV9A0A0B4J1U6 114 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 F2Z2F3 143 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 CNIH1O95406 144 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 LINC00614P0C842 121 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 C3orf79P0CE67 100 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 C8orf88P0DMB2 117 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 ZNF766Q5HY98 468 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 PPP1R32Q7Z5V6 425 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms