RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	DRC3	Q9H069	523 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	OR51I1	Q9H343	314 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	CXorf21	Q9HAI6	301 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	CISH	Q9NSE2	258 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	MED9	Q9NWA0	146 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	FKBP14	Q9NWM8	211 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	IL36B	Q9NZH7	164 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	NAT8	Q9UHE5	227 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	NOSIP	Q9Y314	301 aa	Known RBP	0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	TIMM22	Q9Y584	194 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	SIPA1L1	O43166	1804 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	WDR90	Q96KV7	1748 aa		0.21	□□□□□ -2.38
SPG11-222	ENST00000560435	ADCY9	O60503	1353 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	KIF24	Q5T7B8	1368 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	CPAMD8	Q8IZJ3	1885 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	PTPRB	P23467	1997 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	IGKV1D-43	A0A0B4J1Z2	117 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	TRAV38-1	A0A0B4J264	116 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435		A0A0J9YY10	115 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	TRBV6-5	A0A0K0K1A5	114 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435		A0A1B0GV50	99 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435		A0A1B0GX78	115 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	IRGM	A1A4Y4	181 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	IGKV2-29	A2NJV5	120 aa	Predicted RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	HMSD	A8MTL9	139 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	FABP5P3	A8MUU1	101 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	EEF1E1-BLOC1S5	C9J1V9	151 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	PHGR1	C9JFL3	82 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435		M0R036	132 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	NOS1AP	O75052	506 aa	Predicted RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	AHSA1	O95433	338 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	IGHV3-7	P01780	117 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	CALB1	P05937	261 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	SERPINA6	P08185	405 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	RPSA	P08865	295 aa	Known RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	RNASE3	P12724	160 aa	Known RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	DEFA4	P12838	97 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	UCHL3	P15374	230 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	HIST1H1T	P22492	207 aa	Predicted RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	NFYA	P23511	347 aa	Predicted RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	HLA-DMB	P28068	263 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	S100A7	P31151	101 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	CCR7	P32248	378 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	G6PC	P35575	357 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	MAGEA12	P43365	314 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	RAB13	P51153	203 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	NKX2-5	P52952	324 aa	Predicted RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	AP2S1	P53680	142 aa	Predicted RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	TCL1A	P56279	114 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	SUPT4H1	P63272	117 aa	Known RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	CTAG1A	P78358	180 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	ZNF345	Q14585	488 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	ZNF846	Q147U1	533 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	KISS1	Q15726	138 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	NNAT	Q16517	81 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	MOG	Q16653	247 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	ACOT6	Q3I5F7	207 aa	Predicted RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	ARHGAP11B	Q3KRB8	267 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	COQ5	Q5HYK3	327 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	C9orf64	Q5T6V5	341 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	FAM27B	Q5VT28	67 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	GLT8D1	Q68CQ7	371 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435		Q6ZQT0	140 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	C7orf65	Q6ZTY9	151 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	DCXR	Q7Z4W1	244 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	IQCF2	Q8IXL9	164 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435		Q8N2B8	174 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	LRRC25	Q8N386	305 aa	Predicted RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	C12orf45	Q8N5I9	185 aa	Predicted RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	TBC1D19	Q8N5T2	526 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	ZNF676	Q8N7Q3	588 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	ZNF439	Q8NDP4	499 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	OR13C4	Q8NGS5	318 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	OR2T4	Q8NH00	348 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	PFN4	Q8NHR9	129 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	DDI1	Q8WTU0	396 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	RASSF5	Q8WWW0	418 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	MBD3L1	Q8WWY6	194 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	C11orf40	Q8WZ69	217 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	SLC35B4	Q969S0	331 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	IMP4	Q96G21	291 aa	Known RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	OR52E6	Q96RD3	313 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	NIPSNAP1	Q9BPW8	284 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	DERL1	Q9BUN8	251 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	PARD6G	Q9BYG4	376 aa	Predicted RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	C20orf27	Q9GZN8	174 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	EFCAB1	Q9HAE3	211 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	PARVG	Q9HBI0	331 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	PAQR5	Q9NXK6	330 aa	Predicted RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	MRPL27	Q9P0M9	148 aa	Known RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	BAIAP2	Q9UQB8	552 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	FUT9	Q9Y231	359 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	LSM5	Q9Y4Y9	91 aa	Known RBP	0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	COL6A6	A6NMZ7	2263 aa		0.2	□□□□□ -2.38
SPG11-222	ENST00000560435	FLT4	P35916	1363 aa		0.19	□□□□□ -2.38
SPG11-222	ENST00000560435	FREM1	Q5H8C1	2179 aa		0.19	□□□□□ -2.38
SPG11-222	ENST00000560435	BAZ2B	Q9UIF8	2168 aa	Known RBP	0.19	□□□□□ -2.38
SPG11-222	ENST00000560435	EVC2	Q86UK5	1308 aa		0.19	□□□□□ -2.38
SPG11-222	ENST00000560435	BRWD1	Q9NSI6	2320 aa		0.19	□□□□□ -2.38
SPG11-222	ENST00000560435	PLB1	Q6P1J6	1458 aa		0.19	□□□□□ -2.38

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