RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 BRS3P32247 399 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 LINC00205P59089 165 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 ABHD12Q8N2K0 398 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 PNKDQ8N490 385 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 SIGLECL1Q8N7X8 197 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 LRRC29Q8WV35 223 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 C1orf159Q96HA4 380 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 SLC35E1Q96K37 410 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 IFI27L2Q9H2X8 130 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 SNURFLB1AK76 121 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 ZNF25P17030 456 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-232ENST00000557487 THBS3P49746 956 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 GNG4P50150 75 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 CX3CL1P78423 397 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 GUSBP1Q15486 140 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 POU2AF1Q16633 256 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 ARSJQ5FYB0 599 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-232ENST00000557487 HES3Q5TGS1 186 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 TPRX1Q8N7U7 411 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 SSMEM1Q8WWF3 244 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 NEUROG1Q92886 237 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 SEPSECSQ9HD40 501 aaKnown RBP13.43□□□□□ -0.26
SHMT2-232ENST00000557487 TMEM14BQ9NUH8 114 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 PTPRBP23467 1997 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 SRRM5B3KS81 715 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 DLEU1O43261 78 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 LOXL3P58215 753 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 HLA-DRB5Q30154 266 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 PQLC2Q6ZP29 291 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 GCSAMQ8N6F7 178 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 RNF2Q99496 336 aa13.43□□□□□ -0.26
SHMT2-232ENST00000557487 TECRQ9NZ01 308 aaKnown RBP13.43□□□□□ -0.26
SHMT2-232ENST00000557487 HELTA6NFD8 242 aa13.42□□□□□ -0.26
SHMT2-232ENST00000557487 LINC00614P0C842 121 aa13.42□□□□□ -0.26
SHMT2-232ENST00000557487 BTF3P20290 206 aaKnown RBP13.42□□□□□ -0.26
SHMT2-232ENST00000557487 IER3P46695 156 aa13.42□□□□□ -0.26
SHMT2-232ENST00000557487 ARG2P78540 354 aa13.42□□□□□ -0.26
SHMT2-232ENST00000557487 EDDM3AQ14507 147 aa13.42□□□□□ -0.26
SHMT2-232ENST00000557487 TIGITQ495A1 244 aa13.42□□□□□ -0.26
SHMT2-232ENST00000557487 KRTCAP3Q53RY4 240 aa13.42□□□□□ -0.26
SHMT2-232ENST00000557487 LRP11Q86VZ4 500 aa13.42□□□□□ -0.26
SHMT2-232ENST00000557487 OR4P4Q8NGL7 312 aa13.42□□□□□ -0.26
SHMT2-232ENST00000557487 DOCK11Q5JSL3 2073 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 SLC17A3O00476 420 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 ISLRO14498 428 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 GPX1P07203 203 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 TAS2R45P59539 299 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 PRNDQ9UKY0 176 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 ZNF257Q9Y2Q1 563 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 IGLV1-44P01699 117 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 IGHG3P01860 377 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 HLA-DQA1P01909 254 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 HNF1AP20823 631 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 G0S2P27469 103 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 TMEM30BQ3MIR4 351 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 FAM169BQ8N8A8 192 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 DCTN5Q9BTE1 182 aa13.41□□□□□ -0.26
SHMT2-232ENST00000557487 TRAV3A0A0B4J244 114 aa13.4□□□□□ -0.26
SHMT2-232ENST00000557487 LTC4SQ16873 150 aa13.4□□□□□ -0.26
SHMT2-232ENST00000557487 RPL39P5Q59GN2 51 aa13.4□□□□□ -0.26
SHMT2-232ENST00000557487 CENPWQ5EE01 88 aa13.4□□□□□ -0.26
SHMT2-232ENST00000557487 RNFT1Q5M7Z0 435 aa13.4□□□□□ -0.26
SHMT2-232ENST00000557487 RASL11AQ6T310 242 aa13.4□□□□□ -0.26
SHMT2-232ENST00000557487 TMEM208Q9BTX3 173 aa13.4□□□□□ -0.26
SHMT2-232ENST00000557487 GOLT1BQ9Y3E0 138 aa13.4□□□□□ -0.26
SHMT2-232ENST00000557487 DNAJC13O75165 2243 aa13.4□□□□□ -0.26
SHMT2-232ENST00000557487 IGKV1D-17A0A075B6S4 117 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 CA2P00918 260 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 CECR9P0C854 216 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 LINC00869P0C866 280 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 SPATA31B1PQ5VZV4 182 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 OR4A47Q6IF82 309 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 VKORC1L1Q8N0U8 176 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 OR8I2Q8N0Y5 310 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 VN1R17PQ8TDU5 208 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 KCNS1Q96KK3 526 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 MSL2Q9HCI7 577 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 CALYQ9NYX4 217 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 NAT8BQ9UHF3 227 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 DUSP13Q9UII6 198 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 A0A1W2PRE2 83 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 CGAP01215 116 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 TFF1P04155 84 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 AMY1AP04745 511 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 IRF2P14316 349 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 COMPP49747 757 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-232ENST00000557487 TMEM136Q6ZRR5 245 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 GNB4Q9HAV0 340 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 PAM16Q9Y3D7 125 aa13.39□□□□□ -0.27
SHMT2-232ENST00000557487 FOXH1O75593 365 aa13.38□□□□□ -0.27
SHMT2-232ENST00000557487 CGB3P0DN86 165 aa13.38□□□□□ -0.27
SHMT2-232ENST00000557487 CGB7P0DN87 165 aa13.38□□□□□ -0.27
SHMT2-232ENST00000557487 FABP6P51161 128 aa13.38□□□□□ -0.27
SHMT2-232ENST00000557487 CASP6P55212 293 aa13.38□□□□□ -0.27
SHMT2-232ENST00000557487 PSG5Q15238 335 aa13.38□□□□□ -0.27
SHMT2-232ENST00000557487 COL5A1-AS1Q5SY13 56 aa13.38□□□□□ -0.27
SHMT2-232ENST00000557487 ST6GALNAC3Q8NDV1 305 aa13.38□□□□□ -0.27
SHMT2-232ENST00000557487 NABP2Q9BQ15 211 aa13.38□□□□□ -0.27
SHMT2-232ENST00000557487 COMMD5Q9GZQ3 224 aa13.38□□□□□ -0.27
SHMT2-232ENST00000557487 FAM234AQ9H0X4 552 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms