RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 TBPP20226 339 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 PTBP1P26599 531 aaKnown RBP eCLIP7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 G6PCP35575 357 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 ERVK-16P61578 105 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 TRIM16LQ309B1 348 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 RNASE10Q5GAN6 216 aaKnown RBP7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 C11orf87Q6NUJ2 197 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 TBC1D26Q86UD7 250 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 HAPLN4Q86UW8 402 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 ARRDC1Q8N5I2 433 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 TMEM229BQ8NBD8 167 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 OR10W1Q8NGF6 305 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 CCDC140Q96MF4 163 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 SRSF8Q9BRL6 282 aaKnown RBP7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 QTRT1Q9BXR0 403 aaKnown RBP7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 COMMD5Q9GZQ3 224 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 NXF2Q9GZY0 626 aaKnown RBP7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 SIGLEC8Q9NYZ4 499 aa7.83□□□□□ -1.16
CCDC88C-206ENST00000553437 HUWE1Q7Z6Z7 4374 aaKnown RBP7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 DBX1A6NMT0 343 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 GABARAPH6UMI1 98 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 RGS5O15539 181 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 LY86O95711 162 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 IFNA6P05013 189 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 HNRNPCP07910 306 aaKnown RBP eCLIP7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 TRAPPC2P0DI81 140 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 TRAPPC2BP0DI82 140 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 HIST1H1BP16401 226 aaKnown RBP7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 MECP2P51608 486 aaKnown RBP7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 PPP5CP53041 499 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 RND3P61587 244 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 WT1-ASQ06250 92 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 CD69Q07108 199 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 RPEL1Q2QD12 228 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 FAM209BQ5JX69 171 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 XP32Q5T750 250 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 ADAMTSL5Q6ZMM2 481 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 MRGPRFQ96AM1 343 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 SEC22AQ96IW7 307 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 SOSTQ9BQB4 213 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 NDUFA4L2Q9NRX3 87 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 NSG2Q9Y328 171 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 S4R3C0 116 aa7.82□□□□□ -1.16
CCDC88C-206ENST00000553437 BIRC6Q9NR09 4857 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 MFSD2BA6NFX1 497 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 PPP5D1E7EU14 171 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 CTDSPLO15194 276 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 RAB3DO95716 219 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 DHFRP00374 187 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 IGHV3-23P01764 117 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 HLA-AP01891 365 aaKnown RBP7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 PI3P19957 117 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 S100GP29377 79 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 S100A5P33763 92 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 BCAP31P51572 246 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 TAS2R19P59542 299 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 MRPS10P82664 201 aaKnown RBP7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 SSBP1Q04837 148 aaKnown RBP7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 OXA1LQ15070 435 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 TATDN3Q17R31 274 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 THOC7Q6I9Y2 204 aaKnown RBP7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 STEAP1BQ6NZ63 245 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 Q8N1Y9 231 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 OR1L8Q8NGR8 309 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 TERB2Q8NHR7 220 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 SMIM4Q8WVI0 70 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 ZNF486Q96H40 463 aaPredicted RBP7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 DIRAS2Q96HU8 199 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 TMEM14BQ9NUH8 114 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 OR51B2Q9Y5P1 312 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 SMAD5-AS1Q9Y6J3 95 aa7.81□□□□□ -1.16
CCDC88C-206ENST00000553437 GGCTO75223 188 aaKnown RBP7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 SNAPC5O75971 98 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 OR2C1O95371 312 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 SERPINE2P07093 398 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 OR13C7P0DN81 318 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 DEFA4P12838 97 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 PGAM2P15259 253 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 MFAP2P55001 183 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 PIGPP57054 158 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 CLEC19AQ6UXS0 136 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 HSD17B13Q7Z5P4 300 aaPredicted RBP7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 GPHB5Q86YW7 130 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 GDPD1Q8N9F7 314 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 OR5B3Q8NH48 314 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 ZNF502Q8TBZ5 544 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 EEF1AKMT3Q96AZ1 226 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 TP53RKQ96S44 253 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 THAP7Q9BT49 309 aaPredicted RBP7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 RABL2AQ9UBK7 228 aaPredicted RBP7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 PRNDQ9UKY0 176 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 RABL2BQ9UNT1 228 aa7.8□□□□□ -1.16
CCDC88C-206ENST00000553437 EPPK1P58107 5090 aaKnown RBP7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 TRBV7-1A0A0A6YYK4 115 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 IZUMO1RA6ND01 250 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 C15orf61A6NNL5 157 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 H0Y980 276 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 LGALS9O00182 355 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 GSTZ1O43708 216 aaPredicted RBP7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 UPK1BO75841 260 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms