RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 KRTAP10-3P60369 221 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 SLC35B1P78383 322 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 SPINK9Q5DT21 86 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 OR5AU1Q8NGC0 362 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 OR10W1Q8NGF6 305 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 WFDC12Q8WWY7 111 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 GON7Q9BXV9 100 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 NDUFA4L2Q9NRX3 87 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 ZNF257Q9Y2Q1 563 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 A0A1B0GU03 582 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 CCSO14618 274 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 SOX15O60248 233 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 IFNA21P01568 189 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 AREGP15514 252 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 HSPE1P61604 102 aaKnown RBP16.6■□□□□ 0.25
VPS29-206ENST00000549578 SRSF4Q08170 494 aaKnown RBP16.6■□□□□ 0.25
VPS29-206ENST00000549578 HIST2H2BDQ6DRA6 164 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 C11orf44Q8N8P7 122 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 MINDY2Q8NBR6 621 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 OR5T1Q8NG75 326 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 ALG5Q9Y673 324 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 IGLC7A0M8Q6 106 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 C7orf66A4D0T2 115 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 IFNA17P01571 189 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 AARDQ4LEZ3 155 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 THOC7Q6I9Y2 204 aaKnown RBP16.6■□□□□ 0.25
VPS29-206ENST00000549578 PDCD10Q9BUL8 212 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 COA4Q9NYJ1 87 aa16.6■□□□□ 0.25
VPS29-206ENST00000549578 REG1AP05451 166 aa16.59■□□□□ 0.25
VPS29-206ENST00000549578 PRCDQ00LT1 54 aa16.59■□□□□ 0.25
VPS29-206ENST00000549578 C2orf68Q2NKX9 166 aa16.59■□□□□ 0.25
VPS29-206ENST00000549578 C12orf54Q6X4T0 127 aa16.59■□□□□ 0.25
VPS29-206ENST00000549578 C19orf35Q6ZS72 473 aa16.59■□□□□ 0.25
VPS29-206ENST00000549578 OR1S1Q8NH92 325 aa16.59■□□□□ 0.25
VPS29-206ENST00000549578 TMEM68Q96MH6 324 aa16.59■□□□□ 0.25
VPS29-206ENST00000549578 IGHG4P01861 327 aa16.58■□□□□ 0.24
VPS29-206ENST00000549578 SLC25A6P12236 298 aa16.58■□□□□ 0.24
VPS29-206ENST00000549578 WT1-ASQ06250 92 aa16.58■□□□□ 0.24
VPS29-206ENST00000549578 LCNL1Q6ZST4 164 aa16.58■□□□□ 0.24
VPS29-206ENST00000549578 OR10C1Q96KK4 312 aa16.58■□□□□ 0.24
VPS29-206ENST00000549578 STAB1Q9NY15 2570 aa16.57■□□□□ 0.24
VPS29-206ENST00000549578 FAM25EA8MYX2 175 aa16.57■□□□□ 0.24
VPS29-206ENST00000549578 PITX3O75364 302 aa16.57■□□□□ 0.24
VPS29-206ENST00000549578 CD28P10747 220 aa16.57■□□□□ 0.24
VPS29-206ENST00000549578 KRTAP21-3Q3LHN1 58 aa16.57■□□□□ 0.24
VPS29-206ENST00000549578 TCTEX1D4Q5JR98 221 aa16.57■□□□□ 0.24
VPS29-206ENST00000549578 TEX38Q6PEX7 206 aa16.57■□□□□ 0.24
VPS29-206ENST00000549578 FAM110DQ8TAY7 271 aaPredicted RBP16.57■□□□□ 0.24
VPS29-206ENST00000549578 C13orf42A0A1B0GVH6 325 aa16.56■□□□□ 0.24
VPS29-206ENST00000549578 SSNA1O43805 119 aa16.56■□□□□ 0.24
VPS29-206ENST00000549578 IGLV1-40P01703 118 aa16.56■□□□□ 0.24
VPS29-206ENST00000549578 OR13C7P0DN81 318 aa16.56■□□□□ 0.24
VPS29-206ENST00000549578 SPCS3P61009 180 aa16.56■□□□□ 0.24
VPS29-206ENST00000549578 IAH1Q2TAA2 248 aaPredicted RBP16.56■□□□□ 0.24
VPS29-206ENST00000549578 TTC9CQ8N5M4 171 aa16.56■□□□□ 0.24
VPS29-206ENST00000549578 OR4X2Q8NGF9 303 aa16.56■□□□□ 0.24
VPS29-206ENST00000549578 OR5M8Q8NGP6 311 aa16.56■□□□□ 0.24
VPS29-206ENST00000549578 OR52E5Q8NH55 327 aa16.56■□□□□ 0.24
VPS29-206ENST00000549578 SRSF8Q9BRL6 282 aaKnown RBP16.56■□□□□ 0.24
VPS29-206ENST00000549578 PLEKHA3Q9HB20 300 aa16.56■□□□□ 0.24
VPS29-206ENST00000549578 FBXO24O75426 580 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 PRH1P02810 166 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 PF4V1P10720 104 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 PSMB8P28062 276 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 PSMB6P28072 239 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 CXorf66Q5JRM2 361 aaPredicted RBP16.55■□□□□ 0.24
VPS29-206ENST00000549578 C3orf56Q8N813 242 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 MS4A10Q96PG2 267 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 KLK15Q9H2R5 256 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 ZNF355PQ9NSJ1 428 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 HSPB7Q9UBY9 170 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 C5orf51A6NDU8 294 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 NPIPB5A8MRT5 1133 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 GOSR2O14653 212 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 CTRB1P17538 263 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 HOXA1P49639 335 aaPredicted RBP16.55■□□□□ 0.24
VPS29-206ENST00000549578 TNFRSF9Q07011 255 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 FOXE3Q13461 319 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 PDLIM3Q53GG5 364 aaPredicted RBP16.55■□□□□ 0.24
VPS29-206ENST00000549578 CTRB2Q6GPI1 263 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 C11orf87Q6NUJ2 197 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 HSD17B13Q7Z5P4 300 aaPredicted RBP16.55■□□□□ 0.24
VPS29-206ENST00000549578 COMMD1Q8N668 190 aa16.55■□□□□ 0.24
VPS29-206ENST00000549578 CEBPZOSA8MTT3 80 aa16.54■□□□□ 0.24
VPS29-206ENST00000549578 RPLP1P05386 114 aaKnown RBP16.54■□□□□ 0.24
VPS29-206ENST00000549578 CRYGCP07315 174 aa16.54■□□□□ 0.24
VPS29-206ENST00000549578 ELANEP08246 267 aa16.54■□□□□ 0.24
VPS29-206ENST00000549578 ZBTB8BQ8NAP8 495 aaPredicted RBP16.54■□□□□ 0.24
VPS29-206ENST00000549578 GSKIPQ9P0R6 139 aa16.54■□□□□ 0.24
VPS29-206ENST00000549578 SIX6O95475 246 aa16.53■□□□□ 0.24
VPS29-206ENST00000549578 DEFA5Q01523 94 aa16.53■□□□□ 0.24
VPS29-206ENST00000549578 TMEM65Q6PI78 240 aa16.53■□□□□ 0.24
VPS29-206ENST00000549578 OR2C3Q8N628 320 aa16.53■□□□□ 0.24
VPS29-206ENST00000549578 OR4D5Q8NGN0 318 aa16.53■□□□□ 0.24
VPS29-206ENST00000549578 CITED2Q99967 270 aaPredicted RBP16.53■□□□□ 0.24
VPS29-206ENST00000549578 ZNF747Q9BV97 191 aa16.53■□□□□ 0.24
VPS29-206ENST00000549578 MAGT1Q9H0U3 335 aa16.53■□□□□ 0.24
VPS29-206ENST00000549578 RBKSQ9H477 322 aa16.53■□□□□ 0.24
VPS29-206ENST00000549578 ENY2Q9NPA8 101 aa16.53■□□□□ 0.24
VPS29-206ENST00000549578 CACFD1Q9UGQ2 172 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms