RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 FAM25AB3EWG3 89 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 FAM25CB3EWG5 89 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 FAM25GB3EWG6 89 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 TEX22C9J3V5 150 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 UBE2CO00762 179 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 CTDSP2O14595 271 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 FCGR3BO75015 233 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 PMP2P02689 132 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 HRH1P35367 487 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 APOC4P55056 127 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 TAS2R46P59540 309 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 FXYD4P59646 89 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 CBX3Q13185 183 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 ZNF818PQ6ZRF7 136 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 C19orf35Q6ZS72 473 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 MFSD4AQ8N468 514 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 OSR1Q8TAX0 266 aaPredicted RBP9.49□□□□□ -0.89
USP28-212ENST00000544750 ABHD1Q96SE0 405 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 SLC5A7Q9GZV3 580 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 FXYD6Q9H0Q3 95 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 TAS2R8Q9NYW2 309 aa9.49□□□□□ -0.89
USP28-212ENST00000544750 KIR2DL5BA0A0G2JN68 375 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 KIR2DL5BA0A0G2JPC4 375 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 SMIM31A0A1B0GVY4 71 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 A0A1B0GW64 132 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 HMX3A6NHT5 357 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 E7EUB6 86 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 SULT1C2O00338 296 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 TNFSF12O43508 249 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 SAA1P0DJI8 122 aaPredicted RBP9.48□□□□□ -0.89
USP28-212ENST00000544750 HLA-DMAP28067 261 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 GNRHRP30968 328 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 RCVRNP35243 200 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 ARL3P36405 182 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 RNASE12Q5GAN4 147 aaKnown RBP9.48□□□□□ -0.89
USP28-212ENST00000544750 BTNL8Q6UX41 500 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 CLEC19AQ6UXS0 136 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 ZNF66Q6ZN08 573 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 TMEM17Q86X19 198 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 MMD2Q8IY49 270 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 KIR2DL5AQ8N109 375 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 OR5H2Q8NGV7 314 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 KIR2DL5BQ8NHK3 375 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 TCTEX1D2Q8WW35 142 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 MOB3AQ96BX8 217 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 ZNF2Q9BSG1 426 aaPredicted RBP9.48□□□□□ -0.89
USP28-212ENST00000544750 SLIRPQ9GZT3 109 aaKnown RBP9.48□□□□□ -0.89
USP28-212ENST00000544750 RBM38Q9H0Z9 239 aaKnown RBP9.48□□□□□ -0.89
USP28-212ENST00000544750 FBXL7Q9UJT9 491 aa9.48□□□□□ -0.89
USP28-212ENST00000544750 NPIPB5A8MRT5 1133 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 IGHV3-23P01764 117 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 CRYGCP07315 174 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 IL6RP08887 468 aaPredicted RBP9.47□□□□□ -0.89
USP28-212ENST00000544750 FAM106AQ4KMX7 169 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 UNQ9165/PRO28630Q6UXU0 137 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 SLC25A42Q86VD7 318 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 OR2C3Q8N628 320 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 TMEM217Q8N7C4 229 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 ZBTB34Q8NCN2 500 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 OR1L6Q8NGR2 347 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 OR52I2Q8NH67 350 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 KLK11Q9UBX7 282 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 PRELID3BQ9Y3B1 194 aa9.47□□□□□ -0.89
USP28-212ENST00000544750 A0A1B0GVY2 172 aa9.46□□□□□ -0.9
USP28-212ENST00000544750 HERV-K104P61576 105 aa9.46□□□□□ -0.9
USP28-212ENST00000544750 ODF3L2Q3SX64 289 aa9.46□□□□□ -0.9
USP28-212ENST00000544750 OR4A47Q6IF82 309 aa9.46□□□□□ -0.9
USP28-212ENST00000544750 VKORC1L1Q8N0U8 176 aa9.46□□□□□ -0.9
USP28-212ENST00000544750 PUSL1Q8N0Z8 303 aaKnown RBP9.46□□□□□ -0.9
USP28-212ENST00000544750 OR4S2Q8NH73 311 aa9.46□□□□□ -0.9
USP28-212ENST00000544750 MARC2Q969Z3 335 aa9.46□□□□□ -0.9
USP28-212ENST00000544750 NXF2Q9GZY0 626 aaKnown RBP9.46□□□□□ -0.9
USP28-212ENST00000544750 MRPL27Q9P0M9 148 aaKnown RBP9.46□□□□□ -0.9
USP28-212ENST00000544750 MTFP1Q9UDX5 166 aa9.46□□□□□ -0.9
USP28-212ENST00000544750 S4R3C0 116 aa9.46□□□□□ -0.9
USP28-212ENST00000544750 ZNF320A2RRD8 509 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 M0QYG6 137 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 RGS5O15539 181 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 CREBL2O60519 120 aaPredicted RBP9.45□□□□□ -0.9
USP28-212ENST00000544750 ACTL6BO94805 426 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 S1PR2O95136 353 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 ZNF735P0CB33 412 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 PSMB6P28072 239 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 ELLP55199 621 aaPredicted RBP9.45□□□□□ -0.9
USP28-212ENST00000544750 AADACL3Q5VUY0 350 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 RBPMS2Q6ZRY4 209 aaKnown RBP9.45□□□□□ -0.9
USP28-212ENST00000544750 STPG3Q8N7X2 389 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 FYTTD1Q96QD9 318 aaKnown RBP9.45□□□□□ -0.9
USP28-212ENST00000544750 SPAG8Q99932 426 aaPredicted RBP9.45□□□□□ -0.9
USP28-212ENST00000544750 DCUN1D5Q9BTE7 237 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 C5orf66Q9H5L9 145 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 SLC2A9Q9NRM0 540 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 UBQLN2Q9UHD9 624 aa9.45□□□□□ -0.9
USP28-212ENST00000544750 GABARAPH6UMI1 98 aa9.44□□□□□ -0.9
USP28-212ENST00000544750 TSPAN4O14817 238 aa9.44□□□□□ -0.9
USP28-212ENST00000544750 RBFOX2O43251 390 aaKnown RBP eCLIP9.44□□□□□ -0.9
USP28-212ENST00000544750 NOL3O60936 208 aaKnown RBP9.44□□□□□ -0.9
USP28-212ENST00000544750 KBTBD11O94819 623 aa9.44□□□□□ -0.9
USP28-212ENST00000544750 CTRB1P17538 263 aa9.44□□□□□ -0.9
USP28-212ENST00000544750 FCGR2BP31994 310 aaPredicted RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms