RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PGLYRP4Q96LB8 373 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FBXL7Q9UJT9 491 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 KIAA1671Q9BY89 1806 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 TRBV9A0A0B4J1U6 114 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 MPDU1O75352 247 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 CEACAM8P31997 349 aaPredicted RBP12□□□□□ -0.49
LIMS1-215ENST00000544547 UCP2P55851 309 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 MRPS11P82912 194 aaKnown RBP12□□□□□ -0.49
LIMS1-215ENST00000544547 STPG3Q8N7X2 389 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 CXXC4Q9H2H0 198 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A10PA6NDY2 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A18PA6NE21 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A16PA6NEW6 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A20PA6NIJ5 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A8PA6NJQ4 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A7PA6NKC0 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A22PA8MWA6 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A12PA8MX19 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A5PA8MXJ8 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A23PA8MXZ1 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 TMPRSS2O15393 492 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A15PP0C7V4 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A13PP0C7W8 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A14PP0C7W9 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 FAM90A24PP0C7X0 464 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 GATA2P23769 480 aaPredicted RBP12□□□□□ -0.49
LIMS1-215ENST00000544547 RPL8P62917 257 aaKnown RBP12□□□□□ -0.49
LIMS1-215ENST00000544547 FOXL1Q12952 345 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 RIPPLY2Q5TAB7 128 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 TMEM45BQ96B21 275 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 TRAV9-2A0A087WT02 112 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 C21orf140B9A014 251 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 SYNGR3O43761 229 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 TSPOP30536 169 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 C10orf128Q5T292 105 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 ZNF645Q8N7E2 425 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 HSPB8Q9UJY1 196 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 HILPDAQ9Y5L2 63 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 H3BTX0 84 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 SP1P08047 785 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 CFHR1Q03591 330 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 PDPNQ86YL7 162 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 PNRC2Q9NPJ4 139 aaKnown RBP11.99□□□□□ -0.49
LIMS1-215ENST00000544547 PCNX1Q96RV3 2341 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 TMSB15BA0A087X1C1 80 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 GAGE1Q13065 139 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 ZBTB34Q8NCN2 500 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 NUDT10Q8NFP7 164 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 MS4A5Q9H3V2 200 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 AAMDCQ9H7C9 122 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 HSPB7Q9UBY9 170 aa11.99□□□□□ -0.49
LIMS1-215ENST00000544547 HTTP42858 3142 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 CLDN14O95500 239 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 GPX1P07203 203 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 APELAP0DMC3 54 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 CA7P43166 264 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 PAX9P55771 341 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 OR1B1Q8NGR6 318 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 USF3Q68DE3 2245 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 C5orf42Q9H799 3197 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 HYPMO75409 117 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 IGKV1-5P01602 117 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 PRSS1P07477 247 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 GCSHP23434 173 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 ORAOV1Q8WV07 137 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 ANAPC10Q9UM13 185 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 MED13LQ71F56 2210 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 CORTO00230 105 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 OR4S2Q8NH73 311 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 COX11Q9Y6N1 276 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 H3BUT2 72 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 IGKV1D-33P01593 117 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 IGKV1-33P01594 117 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 HLA-DRB1P01911 266 aa11.98□□□□□ -0.49
LIMS1-215ENST00000544547 MCRIP2Q9BUT9 160 aaKnown RBP11.98□□□□□ -0.49
LIMS1-215ENST00000544547 A0A1W2PN81 502 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 A0A1W2PQM1 296 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 J3QR06 171 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 IL6RP08887 468 aaPredicted RBP11.97□□□□□ -0.49
LIMS1-215ENST00000544547 RAB1CQ92928 201 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 EAF1Q96JC9 268 aaPredicted RBP11.97□□□□□ -0.49
LIMS1-215ENST00000544547 CDC42EP3Q9UKI2 254 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 IGHV3-21A0A0B4J1V1 117 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 FABP2P12104 132 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 SSTR5P35346 364 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 LTBRP36941 435 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 AGFG2O95081 481 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 CD3EP07766 207 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 MOGAT3Q86VF5 341 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 NABP2Q9BQ15 211 aa11.97□□□□□ -0.49
LIMS1-215ENST00000544547 AMMECR1Q9Y4X0 333 aaPredicted RBP11.97□□□□□ -0.49
LIMS1-215ENST00000544547 DNPH1O43598 174 aa11.96□□□□□ -0.49
LIMS1-215ENST00000544547 OR2J3O76001 311 aa11.96□□□□□ -0.49
LIMS1-215ENST00000544547 OR2M7Q8NG81 312 aa11.96□□□□□ -0.49
LIMS1-215ENST00000544547 LEAP2Q969E1 77 aa11.96□□□□□ -0.49
LIMS1-215ENST00000544547 AGMATQ9BSE5 352 aa11.96□□□□□ -0.49
LIMS1-215ENST00000544547 TTC28Q96AY4 2481 aa11.96□□□□□ -0.49
LIMS1-215ENST00000544547 ARF6P62330 175 aa11.96□□□□□ -0.49
LIMS1-215ENST00000544547 MIR17HGQ75NE6 70 aa11.96□□□□□ -0.49
LIMS1-215ENST00000544547 SLC25A40Q8TBP6 338 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms