RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 KLHDC2Q9Y2U9 406 aa16.58■□□□□ 0.24
HDAC4-215ENST00000543185 UNC119Q13432 240 aa16.58■□□□□ 0.24
HDAC4-215ENST00000543185 SNAI3Q3KNW1 292 aa16.58■□□□□ 0.24
HDAC4-215ENST00000543185 HSD52Q0P140 79 aa16.58■□□□□ 0.24
HDAC4-215ENST00000543185 CTSSP25774 331 aa16.58■□□□□ 0.24
HDAC4-215ENST00000543185 RASL11AQ6T310 242 aa16.58■□□□□ 0.24
HDAC4-215ENST00000543185 FOXQ1Q9C009 403 aa16.58■□□□□ 0.24
HDAC4-215ENST00000543185 UCP2P55851 309 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 COX5BP10606 129 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 TSPAN7P41732 249 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 UNQ9370/PRO34162Q6UXP9 181 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 SOX8P57073 446 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 CT55Q8WUE5 264 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 SPANXCQ9NY87 97 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 A8MWV9 139 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 OR13C6PQ8NH95 151 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 ORMDL2Q53FV1 153 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 LDLRAD2Q5SZI1 272 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 CALYQ9NYX4 217 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 TCF19Q9Y242 345 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 ZNF585BQ52M93 769 aa16.57■□□□□ 0.24
HDAC4-215ENST00000543185 RNASEH2CQ8TDP1 164 aaKnown RBP16.57■□□□□ 0.24
HDAC4-215ENST00000543185 ZNF708P17019 499 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 ERVK11-1P61568 191 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 KCNK17Q96T54 332 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 IGHV3OR15-7A0A075B7D8 119 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 PAX2Q02962 417 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 FAM74A4Q5TZK3 123 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 MS4A6AQ9H2W1 248 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 TM4SF5O14894 197 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 SFTPCP11686 197 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 GAGE2BQ13066 116 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 GAGE2EQ4V326 116 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 GAGE2DQ9UEU5 116 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 PLPPR1Q8TBJ4 325 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 DPM2O94777 84 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 KIR3DL3Q8N743 410 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 NCOR1P1Q9H4R4 102 aa16.56■□□□□ 0.24
HDAC4-215ENST00000543185 NPPCP23582 126 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 SRSF6Q13247 344 aaKnown RBP16.55■□□□□ 0.24
HDAC4-215ENST00000543185 FOXC2Q99958 501 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 MEGF9Q9H1U4 602 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 ZNF818PQ6ZRF7 136 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 TMPRSS3P57727 454 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.55■□□□□ 0.24
HDAC4-215ENST00000543185 REG1BP48304 166 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 NXPH1P58417 271 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 OR5AN1Q8NGI8 311 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 NRN1Q9NPD7 142 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 GPR6P46095 362 aaPredicted RBP16.55■□□□□ 0.24
HDAC4-215ENST00000543185 Q5PR19 223 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 HIST1H2BKO60814 126 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 HIST1H2BJP06899 126 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 HIST1H2BOP23527 126 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 HIST1H2BBP33778 126 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 HIST1H2BDP58876 126 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 HIST1H2BCP62807 126 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 HIST2H2BEQ16778 126 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.55■□□□□ 0.24
HDAC4-215ENST00000543185 HIST1H2BHQ93079 126 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 HIST1H2BNQ99877 126 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 HIST1H2BMQ99879 126 aa16.55■□□□□ 0.24
HDAC4-215ENST00000543185 KIAA1644Q3SXP7 199 aa16.54■□□□□ 0.24
HDAC4-215ENST00000543185 H3BUT2 72 aa16.54■□□□□ 0.24
HDAC4-215ENST00000543185 WISP3O95389 354 aaPredicted RBP16.54■□□□□ 0.24
HDAC4-215ENST00000543185 IDI2-AS1Q9NZ38 188 aa16.54■□□□□ 0.24
HDAC4-215ENST00000543185 HOXA3O43365 443 aaPredicted RBP16.54■□□□□ 0.24
HDAC4-215ENST00000543185 UPK3AO75631 287 aa16.54■□□□□ 0.24
HDAC4-215ENST00000543185 UCN2Q96RP3 112 aa16.54■□□□□ 0.24
HDAC4-215ENST00000543185 HBDP02042 147 aa16.54■□□□□ 0.24
HDAC4-215ENST00000543185 SAMD5Q5TGI4 173 aa16.54■□□□□ 0.24
HDAC4-215ENST00000543185 A0A1W2PRS3 328 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 GGTLC3B5MD39 225 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 NPIPB11E5RHQ5 1161 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 HCP5Q6MZN7 132 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 CLEC7AQ9BXN2 247 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 ATXN8Q156A1 80 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 OSR1Q8TAX0 266 aaPredicted RBP16.53■□□□□ 0.24
HDAC4-215ENST00000543185 ORAOV1Q8WV07 137 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 TMEM238C9JI98 176 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 LGALS1P09382 135 aaKnown RBP16.53■□□□□ 0.24
HDAC4-215ENST00000543185 DRD3P35462 400 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 LEPP41159 167 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 OR9G1Q8NH87 305 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 ARHGAP32A7KAX9 2087 aa16.53■□□□□ 0.24
HDAC4-215ENST00000543185 SRP19P09132 144 aaKnown RBP16.52■□□□□ 0.24
HDAC4-215ENST00000543185 WDR82Q6UXN9 313 aa16.52■□□□□ 0.24
HDAC4-215ENST00000543185 GDF15Q99988 308 aa16.52■□□□□ 0.24
HDAC4-215ENST00000543185 C2CD4DB7Z1M9 353 aa16.52■□□□□ 0.24
HDAC4-215ENST00000543185 ZG16O60844 167 aa16.52■□□□□ 0.24
HDAC4-215ENST00000543185 SRSF1Q07955 248 aaKnown RBP eCLIP16.52■□□□□ 0.24
HDAC4-215ENST00000543185 IFI27P40305 119 aaPredicted RBP16.52■□□□□ 0.24
HDAC4-215ENST00000543185 RPRMQ9NS64 109 aa16.52■□□□□ 0.24
HDAC4-215ENST00000543185 PSG4Q00888 419 aa16.52■□□□□ 0.23
HDAC4-215ENST00000543185 SLC25A53Q5H9E4 307 aa16.52■□□□□ 0.23
HDAC4-215ENST00000543185 ASCL2Q99929 193 aa16.52■□□□□ 0.23
HDAC4-215ENST00000543185 IGHV3-21A0A0B4J1V1 117 aa16.52■□□□□ 0.23
HDAC4-215ENST00000543185 CLEC2AQ6UVW9 174 aa16.52■□□□□ 0.23
HDAC4-215ENST00000543185 A0A1W2PPV9 198 aa16.52■□□□□ 0.23
HDAC4-215ENST00000543185 FAM90A9PA6NNJ1 464 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms