RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ZDHHC16Q969W1 377 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 TCF19Q9Y242 345 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 COL2A1P02458 1487 aaPredicted RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 USP54Q70EL1 1684 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 TNFRSF4P43489 277 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 SPXQ9BT56 116 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 MRPS18CQ9Y3D5 142 aaKnown RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 GGTLC3B5MD39 225 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 SUMO2P61956 95 aaKnown RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 LINC01559Q495D7 138 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 MIR17HGQ75NE6 70 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 LINC00305Q7Z4B0 112 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 LIMS2Q7Z4I7 341 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 SLC25A10Q9UBX3 287 aaPredicted RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 URB1O60287 2271 aaKnown RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 ZNFX1Q9P2E3 1918 aaKnown RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 CEACAM5P06731 702 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 SRFP11831 508 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 PTCRAQ6ISU1 281 aaPredicted RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 TMEM178AQ8NBL3 297 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 IGLC7A0M8Q6 106 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 RBMY1BA6NDE4 496 aaKnown RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 RBMY1EA6NEQ0 496 aaKnown RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 RBMY1DP0C7P1 496 aaKnown RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 RBMY1A1P0DJD3 496 aaKnown RBP7.43□□□□□ -1.22
YBX3-208ENST00000540447 RBMY1CP0DJD4 496 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 BMPERQ8N8U9 685 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 NPIPB3Q92617 1050 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 NWD2Q9ULI1 1742 aa7.43□□□□□ -1.22
YBX3-208ENST00000540447 ASCC3Q8N3C0 2202 aaKnown RBP7.42□□□□□ -1.22
YBX3-208ENST00000540447 TRAV24A0A0B4J272 114 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 MCRIP2Q9BUT9 160 aaKnown RBP7.42□□□□□ -1.22
YBX3-208ENST00000540447 PPIHO43447 177 aaKnown RBP7.42□□□□□ -1.22
YBX3-208ENST00000540447 NBEAP1P0C6P0 100 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 ZNF658BQ4V348 819 aaPredicted RBP7.42□□□□□ -1.22
YBX3-208ENST00000540447 ASPHD2Q6ICH7 369 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 LCNL1Q6ZST4 164 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 THAP10Q9P2Z0 257 aaPredicted RBP7.42□□□□□ -1.22
YBX3-208ENST00000540447 IGLL1P15814 213 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 CCL4L1Q8NHW4 92 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 OR5P3Q8WZ94 311 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 A0A1W2PQD3 144 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 CGB1A6NKQ9 187 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 FBXL15Q9H469 300 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 TEX48A0A1B0GUV7 120 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 TNFRSF1AP19438 455 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 RPRMLQ8N4K4 120 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 DEFB127Q9H1M4 99 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 TMEM56-RWDD3S4R434 201 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 KDM3BQ7LBC6 1761 aa7.42□□□□□ -1.22
YBX3-208ENST00000540447 SRSF1Q07955 248 aaKnown RBP eCLIP7.41□□□□□ -1.222e-6■□□□□ 10.8
YBX3-208ENST00000540447 LINC01590Q5TEZ4 76 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 PCSK4Q6UW60 755 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 KIDINS220Q9ULH0 1771 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 UBE2L6O14933 153 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 PFN1P07737 140 aaKnown RBP7.41□□□□□ -1.22
YBX3-208ENST00000540447 HMGA1P17096 107 aaKnown RBP7.41□□□□□ -1.22
YBX3-208ENST00000540447 LGALS7P47929 136 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 TMEM258P61165 79 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 RNF182Q8N6D2 247 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 IGLV1-36A0A0B4J1U3 117 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 PROB1E7EW31 1015 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 H3BMG7 143 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 CIARTQ8N365 385 aaPredicted RBP7.41□□□□□ -1.22
YBX3-208ENST00000540447 PROCRQ9UNN8 238 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 LTN1O94822 1766 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 SLX4Q8IY92 1834 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 RHOGP84095 191 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 DRAM1Q8N682 238 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 FGF11Q92914 225 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 H0Y8X5 98 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 IGFBP6P24592 240 aaPredicted RBP7.41□□□□□ -1.22
YBX3-208ENST00000540447 VN1R4Q7Z5H5 301 aa7.41□□□□□ -1.22
YBX3-208ENST00000540447 NXPH1P58417 271 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 NOGQ13253 232 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 SVIPQ8NHG7 77 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 PHF7Q9BWX1 381 aaPredicted RBP7.4□□□□□ -1.22
YBX3-208ENST00000540447 IGKV3-7A0A075B6H7 116 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 TRAV8-3A0A0A6YYJ7 113 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 C22orf46C9J442 243 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 FNDC10F2Z333 226 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 ZNF146Q15072 292 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 HCP5Q6MZN7 132 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 ANKRD36CQ5JPF3 1778 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 KIF13BQ9NQT8 1826 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 COX7A1P24310 79 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 C15orf53Q8NAA6 179 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 RAX2Q96IS3 184 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 VGLL1Q99990 258 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 SCRT1Q9BWW7 348 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 LOXL2Q9Y4K0 774 aa7.4□□□□□ -1.22
YBX3-208ENST00000540447 NPIPB4C9JG80 1138 aa7.4□□□□□ -1.23
YBX3-208ENST00000540447 RPL27AP46776 148 aaKnown RBP7.4□□□□□ -1.23
YBX3-208ENST00000540447 PIK3C2AO00443 1686 aa7.4□□□□□ -1.23
YBX3-208ENST00000540447 C9JCJ5 164 aa7.4□□□□□ -1.23
YBX3-208ENST00000540447 G3V4G9 280 aa7.4□□□□□ -1.23
YBX3-208ENST00000540447 DXOO77932 396 aaKnown RBP7.4□□□□□ -1.23
YBX3-208ENST00000540447 COX8AP10176 69 aa7.4□□□□□ -1.23
YBX3-208ENST00000540447 MRPL23Q16540 153 aaKnown RBP7.4□□□□□ -1.23
YBX3-208ENST00000540447 WIPI1Q5MNZ9 446 aaPredicted RBP7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms