RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TMEM14BQ9NUH8 114 aa10.81□□□□□ -0.68
LDLR-203ENST00000535915 FOXA2Q9Y261 457 aaPredicted RBP10.81□□□□□ -0.68
LDLR-203ENST00000535915 ANKRD11Q6UB99 2663 aaPredicted RBP10.81□□□□□ -0.68
LDLR-203ENST00000535915 ZNF439Q8NDP4 499 aa10.8□□□□□ -0.68
LDLR-203ENST00000535915 DERL1Q9BUN8 251 aa10.8□□□□□ -0.68
LDLR-203ENST00000535915 AURKAIP1Q9NWT8 199 aaPredicted RBP10.8□□□□□ -0.68
LDLR-203ENST00000535915 MMP23AO75900 390 aa10.8□□□□□ -0.68
LDLR-203ENST00000535915 STAG3L2P0CL84 134 aa10.8□□□□□ -0.68
LDLR-203ENST00000535915 STAG3L3P0CL85 134 aa10.8□□□□□ -0.68
LDLR-203ENST00000535915 MYOD1P15172 320 aa10.8□□□□□ -0.68
LDLR-203ENST00000535915 ARSJQ5FYB0 599 aaPredicted RBP10.8□□□□□ -0.68
LDLR-203ENST00000535915 TEPPQ6URK8 271 aa10.8□□□□□ -0.68
LDLR-203ENST00000535915 ZNF788Q6ZQV5 615 aa10.8□□□□□ -0.68
LDLR-203ENST00000535915 SNRNP40Q96DI7 357 aaKnown RBP10.8□□□□□ -0.68
LDLR-203ENST00000535915 PITPNC1Q9UKF7 332 aa10.8□□□□□ -0.68
LDLR-203ENST00000535915 PCNX1Q96RV3 2341 aa10.8□□□□□ -0.68
LDLR-203ENST00000535915 KALRNO60229 2985 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 CXorf1O96002 111 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 CA2P00918 260 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 CHRNA7P36544 502 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 CCL8P80075 99 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 JOSD1Q15040 202 aaPredicted RBP10.79□□□□□ -0.68
LDLR-203ENST00000535915 KRTCAP3Q53RY4 240 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 C1orf159Q96HA4 380 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 TMEM204Q9BSN7 226 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 LSM4Q9Y4Z0 139 aaKnown RBP10.79□□□□□ -0.68
LDLR-203ENST00000535915 OR51B2Q9Y5P1 312 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 ZFHX2Q9C0A1 2572 aaPredicted RBP10.79□□□□□ -0.68
LDLR-203ENST00000535915 ROS1P08922 2347 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 F6UZH7 168 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 TM4SF5O14894 197 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 TMPRSS2O15393 492 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 IL6RP08887 468 aaPredicted RBP10.79□□□□□ -0.68
LDLR-203ENST00000535915 GZMBP10144 247 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 LINC01551Q86U37 167 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 OR2T10Q8NGZ9 312 aa10.79□□□□□ -0.68
LDLR-203ENST00000535915 ZCCHC14Q8WYQ9 949 aaKnown RBP10.79□□□□□ -0.68
LDLR-203ENST00000535915 ANKRD39Q53RE8 183 aa10.78□□□□□ -0.68
LDLR-203ENST00000535915 ZNRD1Q9P1U0 126 aa10.78□□□□□ -0.68
LDLR-203ENST00000535915 DVL1O14640 695 aa10.78□□□□□ -0.68
LDLR-203ENST00000535915 CCKARP32238 428 aa10.78□□□□□ -0.68
LDLR-203ENST00000535915 SRP14P37108 136 aaKnown RBP10.78□□□□□ -0.68
LDLR-203ENST00000535915 FAM3BP58499 235 aaPredicted RBP10.78□□□□□ -0.68
LDLR-203ENST00000535915 RAB31Q13636 194 aa10.78□□□□□ -0.68
LDLR-203ENST00000535915 KCNIP4Q6PIL6 250 aa10.78□□□□□ -0.68
LDLR-203ENST00000535915 TMEM108Q6UXF1 575 aa10.78□□□□□ -0.68
LDLR-203ENST00000535915 STPG3Q8N7X2 389 aa10.78□□□□□ -0.68
LDLR-203ENST00000535915 RPUSD1Q9UJJ7 312 aaKnown RBP10.78□□□□□ -0.68
LDLR-203ENST00000535915 PGPEP1LA6NFU8 196 aa10.77□□□□□ -0.68
LDLR-203ENST00000535915 J3QR06 171 aa10.77□□□□□ -0.68
LDLR-203ENST00000535915 EFNB3Q15768 340 aa10.77□□□□□ -0.68
LDLR-203ENST00000535915 WFDC8Q8IUA0 241 aa10.77□□□□□ -0.68
LDLR-203ENST00000535915 NUP37Q8NFH4 326 aa10.77□□□□□ -0.68
LDLR-203ENST00000535915 SEPSECSQ9HD40 501 aaKnown RBP10.77□□□□□ -0.68
LDLR-203ENST00000535915 SLC35D1Q9NTN3 355 aa10.77□□□□□ -0.68
LDLR-203ENST00000535915 GOLT1BQ9Y3E0 138 aa10.77□□□□□ -0.68
LDLR-203ENST00000535915 ADGRG4Q8IZF6 3080 aa10.77□□□□□ -0.68
LDLR-203ENST00000535915 ACACAQ13085 2346 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 hADV38S2A0JD32 116 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 IGKV1-16P04430 117 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 CT45A6P0DMU7 189 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 CT45A5P0DMU8 189 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 CT45A7P0DMV0 189 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 RTL8BQ17RB0 113 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 TEX36Q5VZQ5 186 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 SLC25A48Q6ZT89 311 aaKnown RBP10.77□□□□□ -0.69
LDLR-203ENST00000535915 CORO2AQ92828 525 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 TXNDC17Q9BRA2 123 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 SNHG12Q9BXW3 62 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 PLEKHA3Q9HB20 300 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 PRNDQ9UKY0 176 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 PIEZO2Q9H5I5 2752 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 GGCTO75223 188 aaKnown RBP10.77□□□□□ -0.69
LDLR-203ENST00000535915 RHOBP62745 196 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 POU2AF1Q16633 256 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 FAM78BQ5VT40 261 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 SPATA31B1PQ5VZV4 182 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 TMEM183AQ8IXX5 376 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 ZCCHC24Q8N2G6 241 aaKnown RBP10.77□□□□□ -0.69
LDLR-203ENST00000535915 LINC00574Q9H8X3 128 aa10.77□□□□□ -0.69
LDLR-203ENST00000535915 DMXL2Q8TDJ6 3036 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 SCO2A0A1W2PP80 73 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 NKX6-3A6NJ46 265 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 C1QTNF9P0C862 333 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 IGFBP2P18065 325 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 TNFRSF1AP19438 455 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 ZNF114Q8NC26 417 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 RND1Q92730 232 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 FUT9Q9Y231 359 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 A0A0G2JNJ9 132 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 XKRY2A2RUG3 117 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 C16orf97H3BN30 126 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 M0R143 59 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 OR4A8P0C604 315 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 CD99P14209 185 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 GCHFRP30047 84 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 RPL29P47914 159 aaKnown RBP10.76□□□□□ -0.69
LDLR-203ENST00000535915 TMEM30BQ3MIR4 351 aa10.76□□□□□ -0.69
LDLR-203ENST00000535915 CISD2Q8N5K1 135 aaKnown RBP10.76□□□□□ -0.69
LDLR-203ENST00000535915 OR1P1Q8NH06 330 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms