RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 IGKV2-40A0A087WW87 121 aaPredicted RBP1.04□□□□□ -2.24
CD44-238ENST00000534296 PGLYRP1O75594 196 aaPredicted RBP1.04□□□□□ -2.24
CD44-238ENST00000534296 KRT75O95678 551 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 NAPSAO96009 420 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 IGKV2D-40P01614 121 aaPredicted RBP1.04□□□□□ -2.24
CD44-238ENST00000534296 CD79AP11912 226 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 MAP2K4P45985 399 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 RPL28P46779 137 aaKnown RBP1.04□□□□□ -2.24
CD44-238ENST00000534296 REG1BP48304 166 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 NAA20P61599 178 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 ZNF791Q3KP31 576 aaPredicted RBP1.04□□□□□ -2.24
CD44-238ENST00000534296 CD200R1LQ6Q8B3 271 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 AAED1Q7RTV5 226 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 DCXRQ7Z4W1 244 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 WFDC11Q8NEX6 87 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 OR51D1Q8NGF3 324 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 ASB17Q8WXJ9 295 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 OPTNQ96CV9 577 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 ZNF625Q96I27 306 aaPredicted RBP1.04□□□□□ -2.24
CD44-238ENST00000534296 ULBP3Q9BZM4 244 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 PARVGQ9HBI0 331 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 FUT9Q9Y231 359 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 TIMM22Q9Y584 194 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 SOX21Q9Y651 276 aaPredicted RBP1.04□□□□□ -2.24
CD44-238ENST00000534296 KIF15Q9NS87 1388 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 ADGRB3O60242 1522 aa1.04□□□□□ -2.24
CD44-238ENST00000534296 GBF1Q92538 1859 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 LAMA2P24043 3122 aaKnown RBP1.03□□□□□ -2.24
CD44-238ENST00000534296 FUOMA2VDF0 154 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 MEIS3P1A6NDR6 274 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 FABP5P3A8MUU1 101 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 ZNF705FA8MVS1 300 aaPredicted RBP1.03□□□□□ -2.24
CD44-238ENST00000534296 PSMD12O00232 456 aaPredicted RBP1.03□□□□□ -2.24
CD44-238ENST00000534296 LEPROTO15243 131 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 NIPSNAP2O75323 286 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 RPSAP08865 295 aaKnown RBP1.03□□□□□ -2.24
CD44-238ENST00000534296 TFPTP0C1Z6 253 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 UBBP0CG47 229 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 ARL14EPLP0DKL9 152 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 SULT1A1P50225 295 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 SPCS3P61009 180 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 PSME3P61289 254 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 UBE2IP63279 158 aaKnown RBP1.03□□□□□ -2.24
CD44-238ENST00000534296 RPL18Q07020 188 aaKnown RBP1.03□□□□□ -2.24
CD44-238ENST00000534296 HIST3H3Q16695 136 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 TNFAIP8L3Q5GJ75 292 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 LPCAT3Q6P1A2 487 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 DPPA3Q6W0C5 159 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 ZNF550Q7Z398 422 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 OR1M1Q8NGA1 313 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 MBD3L1Q8WWY6 194 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 RNASE6Q93091 150 aaKnown RBP1.03□□□□□ -2.24
CD44-238ENST00000534296 IMP4Q96G21 291 aaKnown RBP1.03□□□□□ -2.24
CD44-238ENST00000534296 DCUN1D1Q96GG9 259 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 OR52E6Q96RD3 313 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 SERPINI1Q99574 410 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 GUCA1BQ9UMX6 200 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 FLT4P35916 1363 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 KDM5BQ9UGL1 1544 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 STRCQ7RTU9 1775 aa1.03□□□□□ -2.24
CD44-238ENST00000534296 NBEAL2Q6ZNJ1 2754 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 A0A0D9SEW6 157 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 TRBV6-5A0A0K0K1A5 114 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 EVPLLA8MZ36 301 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 LST1O00453 97 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 RGS12O14924 1447 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 TGOLN2O43493 480 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 ZNF737O75373 536 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 NSA2O95478 260 aaKnown RBP1.02□□□□□ -2.25
CD44-238ENST00000534296 IFNA5P01569 189 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 PMP2P02689 132 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 C1QAP02745 245 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 C1QCP02747 245 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 ANGP03950 147 aaKnown RBP1.02□□□□□ -2.25
CD44-238ENST00000534296 PRM2P04554 102 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 HLA-DMBP28068 263 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 OMPP47874 163 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 EVX1P49640 407 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 FXYD2P54710 66 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 STX5Q13190 355 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 PMAIP1Q13794 54 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 SPA17Q15506 151 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 FAM201AQ5SY85 155 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 SPOPLQ6IQ16 392 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 C8orf74Q6P047 294 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 MUC6Q6W4X9 2439 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 Q6ZSA8 131 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 C7orf65Q6ZTY9 151 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 C20orf196Q8IYI0 205 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 DOCK3Q8IZD9 2030 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 OR8B3Q8NGG8 313 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 SGMS2Q8NHU3 365 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 C11orf40Q8WZ69 217 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 TMEM106AQ96A25 262 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 PTH2Q96A98 100 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 PPP1R14BQ96C90 147 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 DOCK5Q9H7D0 1870 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 XPNPEP1Q9NQW7 623 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 PRTFDC1Q9NRG1 225 aa1.02□□□□□ -2.25
CD44-238ENST00000534296 BRWD1Q9NSI6 2320 aa1.02□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms