RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 G3V4G9 280 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 I3L521 148 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 FGF2P09038 288 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 RND3P61587 244 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 RPL8P62917 257 aaKnown RBP11.68□□□□□ -0.54
CPSF1-208ENST00000532560 FHL3Q13643 280 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 DEFB136Q30KP8 78 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 C10orf55Q5SWW7 151 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 KPRPQ5T749 579 aaPredicted RBP11.68□□□□□ -0.54
CPSF1-208ENST00000532560 ZNF680Q8NEM1 530 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 TERB2Q8NHR7 220 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 CASTOR1Q8WTX7 329 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 RCC1LQ96I51 464 aaKnown RBP11.68□□□□□ -0.54
CPSF1-208ENST00000532560 SLC2A8Q9NY64 477 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 FLVCR2Q9UPI3 526 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 MEGF8Q7Z7M0 2845 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 DISC1C4P0D8 188 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 DUS4LO95620 317 aaKnown RBP11.67□□□□□ -0.54
CPSF1-208ENST00000532560 TRGV3P03979 118 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 IL6RP08887 468 aaPredicted RBP11.67□□□□□ -0.54
CPSF1-208ENST00000532560 ZNF735P0CB33 412 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 PGAM2P15259 253 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 TPPP2P59282 170 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 RAB14P61106 215 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 ERVK-16P61578 105 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 LGALSLQ3ZCW2 172 aaPredicted RBP11.67□□□□□ -0.54
CPSF1-208ENST00000532560 ZNF585BQ52M93 769 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 CLLU1Q5K131 121 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 TBC1D26Q86UD7 250 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 DMBX1Q8NFW5 382 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 OR5T1Q8NG75 326 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 OR11H4Q8NGC9 324 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 DUX3Q96PT4 197 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 PRRT1Q99946 306 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 TMEM140Q9NV12 185 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 UBQLN2Q9UHD9 624 aa11.67□□□□□ -0.54
CPSF1-208ENST00000532560 NOTCH1P46531 2555 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 MARCH11A6NNE9 402 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 TEX22C9J3V5 150 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 UPK2O00526 184 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 MPPED1O15442 326 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 LGALS1P09382 135 aaKnown RBP11.66□□□□□ -0.54
CPSF1-208ENST00000532560 OR9G9P0C7N8 305 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 APELAP0DMC3 54 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 IGLL1P15814 213 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 HLA-GP17693 338 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 ECI1P42126 302 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 LPAR6P43657 344 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 RPL27AP46776 148 aaKnown RBP11.66□□□□□ -0.54
CPSF1-208ENST00000532560 BEAN1Q3B7T3 259 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 SCGB2B2Q4G0G5 96 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 OXLD1Q5BKU9 147 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 FAAP20Q6NZ36 180 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 C1QL4Q86Z23 238 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 ADAD2Q8NCV1 583 aaKnown RBP11.66□□□□□ -0.54
CPSF1-208ENST00000532560 MS4A10Q96PG2 267 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 SEC22CQ9BRL7 303 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 ZNF355PQ9NSJ1 428 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 COA4Q9NYJ1 87 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 NOTCH3Q9UM47 2321 aa11.66□□□□□ -0.54
CPSF1-208ENST00000532560 OR8U8P0C7N1 319 aa11.65□□□□□ -0.54
CPSF1-208ENST00000532560 ANXA7P20073 488 aaKnown RBP11.65□□□□□ -0.54
CPSF1-208ENST00000532560 PIGPP57054 158 aa11.65□□□□□ -0.54
CPSF1-208ENST00000532560 ZNF616Q08AN1 781 aa11.65□□□□□ -0.54
CPSF1-208ENST00000532560 SURF2Q15527 256 aaPredicted RBP11.65□□□□□ -0.54
CPSF1-208ENST00000532560 TTC9CQ8N5M4 171 aa11.65□□□□□ -0.54
CPSF1-208ENST00000532560 OR11H1Q8NG94 326 aa11.65□□□□□ -0.54
CPSF1-208ENST00000532560 OR13C8Q8NGS7 320 aa11.65□□□□□ -0.54
CPSF1-208ENST00000532560 MRGPRFQ96AM1 343 aa11.65□□□□□ -0.54
CPSF1-208ENST00000532560 OR5B12Q96R08 314 aa11.65□□□□□ -0.54
CPSF1-208ENST00000532560 MCRIP2Q9BUT9 160 aaKnown RBP11.65□□□□□ -0.54
CPSF1-208ENST00000532560 A0A0G2JLM5 398 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 A0A1B0GW64 132 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 G3V3Q6 166 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 H0Y980 276 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 L7N2F9 121 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 TSC22D2O75157 780 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 CTSDP07339 412 aaPredicted RBP11.64□□□□□ -0.55
CPSF1-208ENST00000532560 PI3P19957 117 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 DEFA6Q01524 100 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 FGL1Q08830 312 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 SLC25A42Q86VD7 318 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 CCDC71LQ8N9Z2 235 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 OR51S1Q8NGJ8 323 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 OR1N2Q8NGR9 330 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 GPR61Q9BZJ8 451 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 ZNF257Q9Y2Q1 563 aa11.64□□□□□ -0.55
CPSF1-208ENST00000532560 TRAV3A0A0B4J244 114 aa11.63□□□□□ -0.55
CPSF1-208ENST00000532560 C13orf42A0A1B0GVH6 325 aa11.63□□□□□ -0.55
CPSF1-208ENST00000532560 NPIPB5A8MRT5 1133 aa11.63□□□□□ -0.55
CPSF1-208ENST00000532560 E7EUB6 86 aa11.63□□□□□ -0.55
CPSF1-208ENST00000532560 KRASP01116 189 aa11.63□□□□□ -0.55
CPSF1-208ENST00000532560 RPA2P15927 270 aa11.63□□□□□ -0.55
CPSF1-208ENST00000532560 G6PCP35575 357 aa11.63□□□□□ -0.55
CPSF1-208ENST00000532560 OR2B8PP59922 312 aa11.63□□□□□ -0.55
CPSF1-208ENST00000532560 OPCMLQ14982 345 aa11.63□□□□□ -0.55
CPSF1-208ENST00000532560 MARCH1Q8TCQ1 289 aa11.63□□□□□ -0.55
CPSF1-208ENST00000532560 USMG5Q96IX5 58 aa11.63□□□□□ -0.55
CPSF1-208ENST00000532560 TRBV9A0A0B4J1U6 114 aa11.62□□□□□ -0.55
CPSF1-208ENST00000532560 CGB1A6NKQ9 187 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms