RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 FOXH1O75593 365 aa11.76□□□□□ -0.53
USP48-213ENST00000529637 SSTR5P35346 364 aa11.76□□□□□ -0.53
USP48-213ENST00000529637 FXYD3Q14802 87 aa11.76□□□□□ -0.53
USP48-213ENST00000529637 WDR83OSQ9Y284 106 aa11.76□□□□□ -0.53
USP48-213ENST00000529637 DPRXA6NFQ7 191 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 TSPOP30536 169 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 CDKN1BP46527 198 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 ERVK11-1P61568 191 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 CATR1Q13166 79 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 ZNF146Q15072 292 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 FAM214BQ7L5A3 538 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 SSMEM1Q8WWF3 244 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 SFXN3Q9BWM7 321 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 RNF24Q9Y225 148 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 COX11Q9Y6N1 276 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 V9GYV3 84 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 KMT2EQ8IZD2 1858 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 ITGB1BP1O14713 200 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 NTF3P20783 257 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 VWA1Q6PCB0 445 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 DCTN5Q9BTE1 182 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 RNASE7Q9H1E1 156 aaKnown RBP11.75□□□□□ -0.53
USP48-213ENST00000529637 DUSP13Q9UII6 198 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 PSG11Q9UQ72 335 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 HTD2P86397 168 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 H2BFWTQ7Z2G1 175 aa11.75□□□□□ -0.53
USP48-213ENST00000529637 SEPSECSQ9HD40 501 aaKnown RBP11.75□□□□□ -0.53
USP48-213ENST00000529637 STAG3L2P0CL84 134 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 STAG3L3P0CL85 134 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 SRIP30626 198 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 GABRA6Q16445 453 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 RPEL1Q2QD12 228 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 ZNF718Q3SXZ3 478 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 DOLPP1Q86YN1 238 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 ZNF645Q8N7E2 425 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 KCNS1Q96KK3 526 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 METRNQ9UJH8 293 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 K7EP13 123 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 TREML4Q6UXN2 200 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 FDCSPQ8NFU4 85 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 RAB1CQ92928 201 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 EAF1Q96JC9 268 aaPredicted RBP11.74□□□□□ -0.53
USP48-213ENST00000529637 MGST2Q99735 147 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 MBNL3Q9NUK0 354 aaKnown RBP11.74□□□□□ -0.53
USP48-213ENST00000529637 PLCE1Q9P212 2302 aa11.74□□□□□ -0.53
USP48-213ENST00000529637 LINC00473A8K010 186 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 TOMM40O96008 361 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 PRRX1P54821 245 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 PRR31Q5SQ13 230 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 MRPL54Q6P161 138 aaKnown RBP11.73□□□□□ -0.53
USP48-213ENST00000529637 CLEC7AQ9BXN2 247 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 IQCF6A8MYZ5 107 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 ZNF324O75467 553 aaPredicted RBP11.73□□□□□ -0.53
USP48-213ENST00000529637 INO80CQ6PI98 192 aaPredicted RBP11.73□□□□□ -0.53
USP48-213ENST00000529637 TMEM136Q6ZRR5 245 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 GNG12Q9UBI6 72 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 OOEPA6NGQ2 149 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 CA2P00918 260 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 Q6ZT83 130 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 ZNF738Q8NE65 137 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 GNB1LQ9BYB4 327 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 MS4A5Q9H3V2 200 aa11.73□□□□□ -0.53
USP48-213ENST00000529637 IGHV2OR16-5A0A0B4J2B6 119 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 BMPR1BO00238 502 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 OR9G9P0C7N8 305 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 S100A7P31151 101 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 TSKUQ8WUA8 353 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 LOXL4Q96JB6 756 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 EIF4EBP1Q13541 118 aaPredicted RBP11.72□□□□□ -0.53
USP48-213ENST00000529637 FBLN7Q53RD9 439 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 VHLLQ6RSH7 139 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 OR2Z1Q8NG97 314 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 OR13A1Q8NGR1 328 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 LRRC29Q8WV35 223 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 COQ2Q96H96 371 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 C1orf159Q96HA4 380 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 CXXC4Q9H2H0 198 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 CFAP47Q6ZTR5 3102 aa11.72□□□□□ -0.53
USP48-213ENST00000529637 CA1P00915 261 aaPredicted RBP11.71□□□□□ -0.53
USP48-213ENST00000529637 RELBQ01201 579 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 FOXF2Q12947 444 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 C9orf106Q8NAJ2 232 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 GGTLC1Q9BX51 225 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 ZFHX4Q86UP3 3567 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 PCNX1Q96RV3 2341 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 CXorf1O96002 111 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 CECR9P0C854 216 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 TMEM249Q2WGJ8 235 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 SMIM21Q3B7S5 101 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 PDLIM3Q53GG5 364 aaPredicted RBP11.71□□□□□ -0.53
USP48-213ENST00000529637 ACP7Q6ZNF0 438 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 Q6ZR03 302 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 VKORC1L1Q8N0U8 176 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 OR4C5Q8NGB2 326 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 PTPRZ1P23471 2315 aaPredicted RBP11.71□□□□□ -0.53
USP48-213ENST00000529637 HCFC1P51610 2035 aa11.71□□□□□ -0.53
USP48-213ENST00000529637 J3QW42 95 aa11.71□□□□□ -0.54
USP48-213ENST00000529637 CGAP01215 116 aa11.71□□□□□ -0.54
USP48-213ENST00000529637 GCHFRP30047 84 aa11.71□□□□□ -0.54
USP48-213ENST00000529637 WDR82Q6UXN9 313 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms