RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 HINT2Q9BX68 163 aa11.97□□□□□ -0.49
ECHDC1-220ENST00000528402 RPS10P5Q9NQ39 176 aa11.97□□□□□ -0.49
ECHDC1-220ENST00000528402 INSIG2Q9Y5U4 225 aa11.97□□□□□ -0.49
ECHDC1-220ENST00000528402 LOC105371242A0A075B767 164 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 C7orf77A4D0Y5 90 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 ZFP92A6NM28 416 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 NUPL2O15504 423 aaKnown RBP11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 IGKV1D-33P01593 117 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 IGKV1-33P01594 117 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 IGLV2-23P01705 113 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 REG1BP48304 166 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 PNRC1Q12796 327 aaPredicted RBP11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 MMD2Q8IY49 270 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 Q8N7P7 452 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 NANPQ8TBE9 248 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 RNASEH2CQ8TDP1 164 aaKnown RBP11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 RAB24Q969Q5 203 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 NIPSNAP3BQ9BS92 247 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 C19orf24Q9BVV8 132 aa11.96□□□□□ -0.49
ECHDC1-220ENST00000528402 ATF4P18848 351 aaPredicted RBP11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 CEACAM3P40198 252 aa11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 GPR6P46095 362 aaPredicted RBP11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 AWAT1Q58HT5 328 aa11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 FAM122CQ6P4D5 195 aa11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 KIR3DL3Q8N743 410 aa11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 OR11H6Q8NGC7 330 aa11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 RPEQ96AT9 228 aa11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 TVP23CQ96ET8 276 aa11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 MGST2Q99735 147 aa11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 SSBP3Q9BWW4 388 aaPredicted RBP11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 GGTLC1Q9BX51 225 aa11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 MALRD1Q5VYJ5 2156 aa11.95□□□□□ -0.5
ECHDC1-220ENST00000528402 A0A087WWC5 75 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 IGHV1-3A0A0C4DH29 117 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 A6NNC1 897 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 TMEM250H0YL14 139 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 H3BQ15 152 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 LY6LH3BQJ8 138 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 SNRNP70P08621 437 aaKnown RBP11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 RNASE2P10153 161 aaKnown RBP11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 IGFBP2P18065 325 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 COMPP49747 757 aaPredicted RBP11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 EFNA4P52798 201 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 FGF8P55075 233 aaPredicted RBP11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 HNF4GQ14541 408 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 ARSJQ5FYB0 599 aaPredicted RBP11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 TMEM88Q6PEY1 159 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 CYB561D1Q8N8Q1 229 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 PRELID1Q9Y255 219 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 PXMP4Q9Y6I8 212 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 ENSAO43768 121 aaKnown RBP11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 MT-CO2P00403 227 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 PRTN3P24158 256 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 MEF2BQ02080 365 aaPredicted RBP11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 CD69Q07108 199 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 DIAPH2-AS1Q14236 149 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 SSX7Q7RTT5 188 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 CBLN2Q8IUK8 224 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 OR4P4Q8NGL7 312 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 SLC35E1Q96K37 410 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 SLC25A22Q9H936 323 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 ONECUT1Q9UBC0 465 aa11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 PUS1Q9Y606 427 aaKnown RBP eCLIP11.94□□□□□ -0.5
ECHDC1-220ENST00000528402 COL6A6A6NMZ7 2263 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 ABCA4P78363 2273 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 PIEZO1Q92508 2521 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 LOC105371267A0A1B0GV96 52 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 CXorf65A6NEN9 183 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 CXorf1O96002 111 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 CRYGBP07316 175 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 HTR1DP28221 377 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 B2MP61769 119 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 RHOBP62745 196 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 RNF212Q495C1 297 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 ETFRF1Q6IPR1 90 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 MOB3BQ86TA1 216 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 PNKDQ8N490 385 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 SRSF8Q9BRL6 282 aaKnown RBP11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 ZNF430Q9H8G1 570 aaPredicted RBP11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 SIRT7Q9NRC8 400 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 DPM3Q9P2X0 92 aa11.93□□□□□ -0.5
ECHDC1-220ENST00000528402 OOSP1A8MZH6 123 aa11.92□□□□□ -0.5
ECHDC1-220ENST00000528402 C22orf46C9J442 243 aa11.92□□□□□ -0.5
ECHDC1-220ENST00000528402 SLC25A17O43808 307 aa11.92□□□□□ -0.5
ECHDC1-220ENST00000528402 ACTL6BO94805 426 aa11.92□□□□□ -0.5
ECHDC1-220ENST00000528402 YIF1AO95070 293 aa11.92□□□□□ -0.5
ECHDC1-220ENST00000528402 UQCRFS1P47985 274 aa11.92□□□□□ -0.5
ECHDC1-220ENST00000528402 UBTD1Q9HAC8 227 aa11.92□□□□□ -0.5
ECHDC1-220ENST00000528402 TNCP24821 2201 aa11.91□□□□□ -0.5
ECHDC1-220ENST00000528402 COLCA2A8K830 154 aa11.91□□□□□ -0.5
ECHDC1-220ENST00000528402 MT-ND4LP03901 98 aa11.91□□□□□ -0.5
ECHDC1-220ENST00000528402 OPN1MWP04001 364 aa11.91□□□□□ -0.5
ECHDC1-220ENST00000528402 STAG3L2P0CL84 134 aa11.91□□□□□ -0.5
ECHDC1-220ENST00000528402 STAG3L3P0CL85 134 aa11.91□□□□□ -0.5
ECHDC1-220ENST00000528402 OPN1MW2P0DN77 364 aa11.91□□□□□ -0.5
ECHDC1-220ENST00000528402 OPN1MW3P0DN78 364 aa11.91□□□□□ -0.5
ECHDC1-220ENST00000528402 FOLR2P14207 255 aa11.91□□□□□ -0.5
ECHDC1-220ENST00000528402 MYOD1P15172 320 aa11.91□□□□□ -0.5
ECHDC1-220ENST00000528402 PRR20EP86478 221 aa11.91□□□□□ -0.5
ECHDC1-220ENST00000528402 PRR20CP86479 221 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms